2R76A

Crystal structure of the rare lipoprotein b (so_1173) from shewanella oneidensis, northeast structural genomics consortium target sor91a
Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
132
structure length
132
Chain Sequence
NQLSLSSSDEYKELTRLVRERLRLNNVKIVDAANDVPVLRLITDSLERSTLSLYPTGNVAEYELIYFVEFAVALPGKEAQPFKIEIRRDYLDDPRTALAKSREMELLVKEMRIQAADRILQSMASTEVNLEH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (42-45)S1 (37-42)S3 (73-88)TI2 (68-71)TI1 (44-47)TIV2 (65-68)AH1 (48-60)S2 (63-64)TI3 (89-92)TII1 (109-112)S4 (94-108)S5 (115-126)Updating...
connected with : NaN
molecule tags Lipoprotein
source organism Shewanella oneidensis
publication title Crystal structure of the rare lipoprotein B (SO_1173) from Shewanella oneidensis.
rcsb
molecule keywords Rare lipoprotein B
total genus 32
structure length 132
sequence length 132
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-09-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04390 LptE Lipopolysaccharide-assembly
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.150 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Lipoprotein like domain 2r76A00
4KWYA 2JXPA 2R76A 3BF2A 4RHBB 5TSEA 5IXMB 5IV8B 4NHRA 4RH8A 4Q35B 2N8XA 4N4RB
chains in the Genus database with same CATH superfamily
2L6MA 2LBSB 1GQEA 2L2NA 2WBSA 2UUBE 2LO3A 3P1XA 4DV2E 1IBKE 2UUAE 4WSPA 5KL6A 2NUEA 2L3JA 3T1HE 4ZYGA 2UXBE 2EE8A 2EM8A 1WJPA 1YUJA 4YY3E 3M99B 2MDGA 2YTGA 5A6AA 4LU9A 2F8BA 3LMLA 4ZYEA 4F54A 2EOZA 4P7DA 2YTDA 2DSYA 1B69A 1EKZA 5AE1A 3MHHC 2M1SA 1G2FC 2EQ1A 4DMIA 1QNTA 2EORA 4R2PA 2EPMX 2B9DA 2NUFA 4M30A 2RTXA 2EWLA 2EN1A 2EJ4A 4IJDA 1GTKA 2EOOA 1UBDC 2L8TA 4DV6E 2EOHA 2EPZA 2ZM6E 1P47A 2LCEA 5T6JA 2EOJA 4R2AA 2VRDA 4LF8E 2DMYA 3F6GA 5TSEA 1T4NA 4WFTA 2V86A 4OX9E 2YTNA 4WPYA 1A1FA 3THOB 1L4SA 2EN7A 2WBTA 2WCC3 1O0WA 4DUZE 4B3RE 4JI2E 2UUCE 4JI3E 2WZOA 2ODRC 1IQSA 5KL2A 4DR7E 5LL6R 5BR8E 2EP3A 1JK1A 2YU5A 2UXDE 2EMZA 3OTOE 1KYQA 3BBGA 2EMWA 3FIGA 4GKJE 4ZYDA 3IWCA 2DRPA 1YYWA 2MC6A 1A1LA 2RPCA 4WXDA 1LLMC 2M4IA 1X3CA 2YU8A 1HNXE 2EMLA 5KL7A 3J80C 2EPCA 3OMLA 2YTEA 2FTXB 1N3GA 1BBGA 1T38A 4X9JA 1N34E 1RMDA 1ZBTA 2EMGA 2N3HA 2EMBA 2EM7A 4N4RB 2EMYA 2EQ3A 2JYAA 2I9IA 2EN8A 4X65E 1UILA 1EH7A 5IXMB 1N33E 2L33A 2VF1A 1IBME 2LTSA 2RSIA 4R2RA 1DQ3A 2YZTA 1T39A 1STUA 1XMQE 2KOUA 3C6KA 1AAYA 2H36X 2V8QB 4JI7E 4M2ZA 4RH8A 2YPNA 5CFFE 1A1HA 2YRHA 3QG5C 4BC7A 2EPOA 2EM2A 4Q35B 3JU0A 1EH6A 2I13A 4R2DA 4LF7E 2HC5A 4TUIA 2EM3A 3EQ1A 2ENHA 2JXPA 2MDRA 2RS7A 1IQOA 2DMIA 4M0VA 1GZ6A 5AASA 2JY9A 5ADZA 2EMFA 3AV0A 2EMXA 2JP9A 2MKDA 2DLKA 1PKPA 3ZOQB 4F6NA 5F3WA 4KWYA 2GPIA 2JOBA 1UN6B 3C6MA 3EPLA 4X66E 2EOEA 3JTZA 4JYAE 4DR2E 3ADIA 4GZNC 1PDAA 4B3TE 2NUGA 4BBYA 1XNRE 1F2IG 4JV5E 2LVHA 4F9CB 1YZ9A 2ENCA 2CT1A 1X47A 1X48A 4LF9E 4DUYE 5LMUE 2EZ6A 4DR6E 3HXLA 1YFHA 1WHNA 3VK6A 5LMNE 2L2MA 3UK3C 4O43A 5A69A 4J8ZA 1HNWE 1T4OA 5IWAE 2R1FA 2M9AA 2VQFE 4GKKE 4B3SE 2EPKX 4Q28A 5FLXC 4F6MA 5KL5A 2LT7A 2CSHA 1YYOA 3HQ1A 2EPRA 2ODRD 3BGHA 3MHSC 3KWRA 4BC9A 1A1KA 1ZU1A 3KZYA 4HTGA 1HNZE 2LUQA 1NEIA 4LF4E 1YUIA 4NHRA 2J7JA 2RQLA 4KHPE 4BCAA 3T1YE 2ELYA 2EPAA 1WRJA 1FKAE 1UHZA 2LRSA 2RS6A 2EM9A 4K0KE 2NABA 1X49A 4BHBA 2FV4B 2DIXA 4DR3E 1AH5A 2YRMA 1J5EE 4JI8E 3C4BA 1Z1BA 2A25A 1MGTA 2BB8A 2E72A 2N3GA 3EPHA 2D9HA 4FK5C 2MC5A 1SR9A 2EPPA 2EM0A 5A6JA 3KZZA 3DF6A 3IWBA 2EL6A 2IHR1 1X5WA 4O24A 1YSAC 1JK2A 3HTXA 4MLQA 1DI2A 4TUGA 1RQ0A 2EL5A 4GEQB 1N32E 4R03A 4X64E 1XMOE 3ADJA 4LF5E 4WYQB 4DKKA 1N36E 2YTFA 2ADRA 2EMKA 4B3ME 2N8XA 4WSGA 2L3CA 2LJUA 4R8OA 4DV3E 2HGHA 5A6BA 1A1JA 4LF6E 2VE7C 1NCSA 2EN2A 2LUPB 1T4LB 2EOIA 3DJWA 4ZYHA 3MSWA 2LE2A 4OOGC 4DV1E 4AQYE 3J7AG 4JI4E 1G2DC 2YTPA 3THNA 1ZBQA 4IS1C 4R2EA 2EM4A 2ENAA 2DGCA 1I94E 2E1MA 2VQEE 4MLVA 4X8WA 2V89A 2UXCE 1BB8A 4R2SA 3HPSA 4DV0E 2E5LE 2YT4A 2EMHA 2EOXA 3EPKA 3C4TA 3VHTB 4X62E 1A1GA 1BBOA 3JAMC 1YPNA 4LTYA 4LFBE 2CTDA 4DR5E 2LTRA 1WHQA 1IMUA 4YHHE 1FJGE 5IT9C 5AC5A 4NXME 1PJTA 2R76A 2YTQA 4I8OA 2NA2A 1ZAAC 2WBUA 2JR1A 2M7QA 3ADLA 3IWDA 5AC4A 4LFAE 4WX9A 2YRKA 1A1IA 2UU9E 1QU6A 2V88A 1ZR9A 2ELZA 3AUZA 2YTIA 1WXRA 5KL4A 4JI6E 3TQMA 5IV8B 1TF6A 1J26A 3HPZA 2YSOA 4DV4E 3L00A 4BS9A 3J81C 1RC7A 3ECRA 2EPXA 1XNQE 5A6BD 2EOQA 2EM6A 2EPUA 3RMPA 1DGCA 2EPNA 4JI0E 2L92A 2LJHA 2YTJA 2EL4A 2YWQA 2GLIA 2KONA 4KZSA 2EOMA 2JWOA 2GHFA 4JI1E 2DLQA 5A2QC 2BBGA 2B3TB 2EOFA 3ADGA 5DNYA 4O4KA 2FGGA 4NXNE 3BF2A 4DV5E 4DR4E 5LLQA 2B7VA 1X6HA 3BIDA 2MKNA 4F9AB 5AE2A 4F2JC 4P78A 2KHXA 2CPNA 2EN3A 2HHHE 1SFEA 4M9VC 4WXCA 4R2CA 1X6FA 5AE3A 2EN6A 2Q8UA 2B7TA 2EMIA 4HEIA 4DR1E 1TN9A 4JI5E 2YSPA 3J7Yp 4RHBB 4BMJA 2PRTA 1IBLE 2K4VA 1PJQA 1X6EA 3K6QA 1HR0E 2EMCA 5KL3A 5A6KA 1YYKA 2EOSA 1EH8A 2K7IA 2EMAA 2RSMA 2YTOA 3F6HA 4L5NC 3VYYA 3LLHA 2HJJA 4DV7E 4LFCE 1MEYC 2JPAA 3VYXA 1KJKA 2EQ0A 2JOXA 4F9BB 2G7HA 2EN4A 2F4VE 2EPLX 2LV2A 2L2KB 2V87A 3EPJA 2LMZA 1PJSA 3H09A 4O5GA 4BHCA 4L8NA 1TF3A 4R2QA 2EM5A 2V83A 2V85A 2JVAA 2DB2A 4NZVA 2EOYA
chains in the Genus database with same CATH topology
4KWYA 2JXPA 2R76A 3BF2A 4RHBB 5TSEA 5IXMB 5IV8B 4NHRA 4RH8A 4Q35B 2N8XA 4N4RB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KWY A;  2JXP A;  2R76 A;  3BF2 A;  4RHB B;  5TSE A;  5IXM B;  5IV8 B;  4NHR A;  4RH8 A;  4Q35 B;  2N8X A;  4N4R B; 
#chains in the Genus database with same CATH topology
 2L6M A;  2LBS B;  1GQE A;  2L2N A;  2WBS A;  2UUB E;  2LO3 A;  3P1X A;  4DV2 E;  1IBK E;  2UUA E;  4WSP A;  5KL6 A;  2NUE A;  2L3J A;  3T1H E;  4ZYG A;  2UXB E;  2EE8 A;  2EM8 A;  1WJP A;  1YUJ A;  4YY3 E;  3M99 B;  2MDG A;  2YTG A;  5A6A A;  4LU9 A;  2F8B A;  3LML A;  4ZYE A;  4F54 A;  2EOZ A;  4P7D A;  2YTD A;  2DSY A;  1B69 A;  1EKZ A;  5AE1 A;  3MHH C;  2M1S A;  1G2F C;  2EQ1 A;  4DMI A;  1QNT A;  2EOR A;  4R2P A;  2EPM X;  2B9D A;  2NUF A;  4M30 A;  2RTX A;  2EWL A;  2EN1 A;  2EJ4 A;  4IJD A;  1GTK A;  2EOO A;  1UBD C;  2L8T A;  4DV6 E;  2EOH A;  2EPZ A;  2ZM6 E;  1P47 A;  2LCE A;  5T6J A;  2EOJ A;  4R2A A;  2VRD A;  4LF8 E;  2DMY A;  3F6G A;  5TSE A;  1T4N A;  4WFT A;  2V86 A;  4OX9 E;  2YTN A;  4WPY A;  1A1F A;  3THO B;  1L4S A;  2EN7 A;  2WBT A;  2WCC 3;  1O0W A;  4DUZ E;  4B3R E;  4JI2 E;  2UUC E;  4JI3 E;  2WZO A;  2ODR C;  1IQS A;  5KL2 A;  4DR7 E;  5LL6 R;  5BR8 E;  2EP3 A;  1JK1 A;  2YU5 A;  2UXD E;  2EMZ A;  3OTO E;  1KYQ A;  3BBG A;  2EMW A;  3FIG A;  4GKJ E;  4ZYD A;  3IWC A;  2DRP A;  1YYW A;  2MC6 A;  1A1L A;  2RPC A;  4WXD A;  1LLM C;  2M4I A;  1X3C A;  2YU8 A;  1HNX E;  2EML A;  5KL7 A;  3J80 C;  2EPC A;  3OML A;  2YTE A;  2FTX B;  1N3G A;  1BBG A;  1T38 A;  4X9J A;  1N34 E;  1RMD A;  1ZBT A;  2EMG A;  2N3H A;  2EMB A;  2EM7 A;  4N4R B;  2EMY A;  2EQ3 A;  2JYA A;  2I9I A;  2EN8 A;  4X65 E;  1UIL A;  1EH7 A;  5IXM B;  1N33 E;  2L33 A;  2VF1 A;  1IBM E;  2LTS A;  2RSI A;  4R2R A;  1DQ3 A;  2YZT A;  1T39 A;  1STU A;  1XMQ E;  2KOU A;  3C6K A;  1AAY A;  2H36 X;  2V8Q B;  4JI7 E;  4M2Z A;  4RH8 A;  2YPN A;  5CFF E;  1A1H A;  2YRH A;  3QG5 C;  4BC7 A;  2EPO A;  2EM2 A;  4Q35 B;  3JU0 A;  1EH6 A;  2I13 A;  4R2D A;  4LF7 E;  2HC5 A;  4TUI A;  2EM3 A;  3EQ1 A;  2ENH A;  2JXP A;  2MDR A;  2RS7 A;  1IQO A;  2DMI A;  4M0V A;  1GZ6 A;  5AAS A;  2JY9 A;  5ADZ A;  2EMF A;  3AV0 A;  2EMX A;  2JP9 A;  2MKD A;  2DLK A;  1PKP A;  3ZOQ B;  4F6N A;  5F3W A;  4KWY A;  2GPI A;  2JOB A;  1UN6 B;  3C6M A;  3EPL A;  4X66 E;  2EOE A;  3JTZ A;  4JYA E;  4DR2 E;  3ADI A;  4GZN C;  1PDA A;  4B3T E;  2NUG A;  4BBY A;  1XNR E;  1F2I G;  4JV5 E;  2LVH A;  4F9C B;  1YZ9 A;  2ENC A;  2CT1 A;  1X47 A;  1X48 A;  4LF9 E;  4DUY E;  5LMU E;  2EZ6 A;  4DR6 E;  3HXL A;  1YFH A;  1WHN A;  3VK6 A;  5LMN E;  2L2M A;  3UK3 C;  4O43 A;  5A69 A;  4J8Z A;  1HNW E;  1T4O A;  5IWA E;  2R1F A;  2M9A A;  2VQF E;  4GKK E;  4B3S E;  2EPK X;  4Q28 A;  5FLX C;  4F6M A;  5KL5 A;  2LT7 A;  2CSH A;  1YYO A;  3HQ1 A;  2EPR A;  2ODR D;  3BGH A;  3MHS C;  3KWR A;  4BC9 A;  1A1K A;  1ZU1 A;  3KZY A;  4HTG A;  1HNZ E;  2LUQ A;  1NEI A;  4LF4 E;  1YUI A;  4NHR A;  2J7J A;  2RQL A;  4KHP E;  4BCA A;  3T1Y E;  2ELY A;  2EPA A;  1WRJ A;  1FKA E;  1UHZ A;  2LRS A;  2RS6 A;  2EM9 A;  4K0K E;  2NAB A;  1X49 A;  4BHB A;  2FV4 B;  2DIX A;  4DR3 E;  1AH5 A;  2YRM A;  1J5E E;  4JI8 E;  3C4B A;  1Z1B A;  2A25 A;  1MGT A;  2BB8 A;  2E72 A;  2N3G A;  3EPH A;  2D9H A;  4FK5 C;  2MC5 A;  1SR9 A;  2EPP A;  2EM0 A;  5A6J A;  3KZZ A;  3DF6 A;  3IWB A;  2EL6 A;  2IHR 1;  1X5W A;  4O24 A;  1YSA C;  1JK2 A;  3HTX A;  4MLQ A;  1DI2 A;  4TUG A;  1RQ0 A;  2EL5 A;  4GEQ B;  1N32 E;  4R03 A;  4X64 E;  1XMO E;  3ADJ A;  4LF5 E;  4WYQ B;  4DKK A;  1N36 E;  2YTF A;  2ADR A;  2EMK A;  4B3M E;  2N8X A;  4WSG A;  2L3C A;  2LJU A;  4R8O A;  4DV3 E;  2HGH A;  5A6B A;  1A1J A;  4LF6 E;  2VE7 C;  1NCS A;  2EN2 A;  2LUP B;  1T4L B;  2EOI A;  3DJW A;  4ZYH A;  3MSW A;  2LE2 A;  4OOG C;  4DV1 E;  4AQY E;  3J7A G;  4JI4 E;  1G2D C;  2YTP A;  3THN A;  1ZBQ A;  4IS1 C;  4R2E A;  2EM4 A;  2ENA A;  2DGC A;  1I94 E;  2E1M A;  2VQE E;  4MLV A;  4X8W A;  2V89 A;  2UXC E;  1BB8 A;  4R2S A;  3HPS A;  4DV0 E;  2E5L E;  2YT4 A;  2EMH A;  2EOX A;  3EPK A;  3C4T A;  3VHT B;  4X62 E;  1A1G A;  1BBO A;  3JAM C;  1YPN A;  4LTY A;  4LFB E;  2CTD A;  4DR5 E;  2LTR A;  1WHQ A;  1IMU A;  4YHH E;  1FJG E;  5IT9 C;  5AC5 A;  4NXM E;  1PJT A;  2R76 A;  2YTQ A;  4I8O A;  2NA2 A;  1ZAA C;  2WBU A;  2JR1 A;  2M7Q A;  3ADL A;  3IWD A;  5AC4 A;  4LFA E;  4WX9 A;  2YRK A;  1A1I A;  2UU9 E;  1QU6 A;  2V88 A;  1ZR9 A;  2ELZ A;  3AUZ A;  2YTI A;  1WXR A;  5KL4 A;  4JI6 E;  3TQM A;  5IV8 B;  1TF6 A;  1J26 A;  3HPZ A;  2YSO A;  4DV4 E;  3L00 A;  4BS9 A;  3J81 C;  1RC7 A;  3ECR A;  2EPX A;  1XNQ E;  5A6B D;  2EOQ A;  2EM6 A;  2EPU A;  3RMP A;  1DGC A;  2EPN A;  4JI0 E;  2L92 A;  2LJH A;  2YTJ A;  2EL4 A;  2YWQ A;  2GLI A;  2KON A;  4KZS A;  2EOM A;  2JWO A;  2GHF A;  4JI1 E;  2DLQ A;  5A2Q C;  2BBG A;  2B3T B;  2EOF A;  3ADG A;  5DNY A;  4O4K A;  2FGG A;  4NXN E;  3BF2 A;  4DV5 E;  4DR4 E;  5LLQ A;  2B7V A;  1X6H A;  3BID A;  2MKN A;  4F9A B;  5AE2 A;  4F2J C;  4P78 A;  2KHX A;  2CPN A;  2EN3 A;  2HHH E;  1SFE A;  4M9V C;  4WXC A;  4R2C A;  1X6F A;  5AE3 A;  2EN6 A;  2Q8U A;  2B7T A;  2EMI A;  4HEI A;  4DR1 E;  1TN9 A;  4JI5 E;  2YSP A;  3J7Y p;  4RHB B;  4BMJ A;  2PRT A;  1IBL E;  2K4V A;  1PJQ A;  1X6E A;  3K6Q A;  1HR0 E;  2EMC A;  5KL3 A;  5A6K A;  1YYK A;  2EOS A;  1EH8 A;  2K7I A;  2EMA A;  2RSM A;  2YTO A;  3F6H A;  4L5N C;  3VYY A;  3LLH A;  2HJJ A;  4DV7 E;  4LFC E;  1MEY C;  2JPA A;  3VYX A;  1KJK A;  2EQ0 A;  2JOX A;  4F9B B;  2G7H A;  2EN4 A;  2F4V E;  2EPL X;  2LV2 A;  2L2K B;  2V87 A;  3EPJ A;  2LMZ A;  1PJS A;  3H09 A;  4O5G A;  4BHC A;  4L8N A;  1TF3 A;  4R2Q A;  2EM5 A;  2V83 A;  2V85 A;  2JVA A;  2DB2 A;  4NZV A;  2EOY A; 
#chains in the Genus database with same CATH homology
 4KWY A;  2JXP A;  2R76 A;  3BF2 A;  4RHB B;  5TSE A;  5IXM B;  5IV8 B;  4NHR A;  4RH8 A;  4Q35 B;  2N8X A;  4N4R B; 
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