2RQL | Genus

Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	21
sequence length	95
structure length	95
Chain Sequence	MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__505349154263809__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__505349154263809__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/2RQL/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__505349154263809__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"505349154263809","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/2RQL/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__505349154263809__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Translation
source organism	Escherichia coli
publication title	Solution structure of the E. coli ribosome hibernation promoting factor HPF: Implications for the relationship between structure and function. pubmed doi rcsb
molecule keywords	Probable sigma-54 modulation protein
total genus	21
structure length	95
sequence length	95
ec nomenclature
pdb deposition date	2009-08-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02482	Ribosomal_S30AE	Sigma 54 modulation protein / S30EA ribosomal protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.160.100	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	Ribosome hibernation promotion factor-like	2rqlA00

1IMUA 1L4SA 3TQMA 4HEIA 2RQLA 1N3GA 2YWQA
chains in the Genus database with same CATH superfamily

2MDGA 4BBYA 4R2SA 5A6BA 2RS7A 2EOHA 3HTXA 4DV1E 2EMGA 3OTOE 1YYKA 1BBGA 4J8ZA 4LTYA 3VYXA 4F6MA 4LFBE 4DR2E 2E5LE 2EPMX 4O24A 2MKDA 1YYWA 1ZBTA 2ELYA 1WRJA 2WBSA 2EQ0A 2LJUA 2N3HA 2EN1A 4DMIA 1X6EA 3ADJA 4ZYGA 2Q8UA 1HNWE 1IBME 2RS6A 2EQ1A 2B9DA 2UUCE 4R8OA 1RC7A 4JYAE 2EOIA 4BS9A 2UXDE 3IWDA 2I9IA 3HQ1A 4GZNC 1P47A 1A1JA 5BR8E 2EE8A 3J7Yp 1KYQA 2RSIA 3BIDA 4F9AB 4F9CB 4JI0E 2WBTA 3ADLA 2L2NA 2K7IA 4GEQB 2NA2A 5LMNE 4JI4E 1HNXE 1EH7A 1DGCA 2BBGA 2EPAA 2JOXA 2YTFA 2EOEA 4FK5C 4Q28A 3LLHA 4DKKA 2WZOA 1WXRA 2K4VA 5IWAE 4X8WA 2JPAA 5A6JA 4R2DA 3VHTB 4LFCE 4MLQA 4LF8E 2F4VE 1X6HA 2IHR1 1J5EE 2RQLA 2EORA 1GZ6A 1N32E 2MC5A 2L92A 4DUYE 4NXNE 2HJJA 1HNZE 4LF9E 4DR3E 4Q35B 1B69A 2EOXA 2VQEE 3M99B 5ADZA 2EPXA 2L33A 1N33E 1AH5A 2EL6A 1YUJA 2JVAA 4X9JA 1N3GA 1A1FA 4LF5E 2V86A 1JK2A 1F2IG 1WJPA 3P1XA 4B3ME 4L5NC 4R03A 2CPNA 2ODRC 1TF3A 1UILA 4DR5E 2EPUA 2J7JA 5LLQA 4DR1E 1KJKA 2LJHA 2EMHA 1QNTA 1PJSA 4L8NA 3BGHA 4N4RB 2LTRA 2CTDA 5IV8B 3AUZA 2JY9A 1N34E 2YU5A 4RH8A 2V85A 3VK6A 1MEYC 2EM9A 1UHZA 4R2EA 2EMAA 2EPKX 2FV4B 2DIXA 2YRKA 4I8OA 2UXCE 2EOJA 2FTXB 1A1LA 2JWOA 2EN3A 2N3GA 3ECRA 2VQFE 2EMYA 2YT4A 4B3SE 1X47A 3FIGA 4JI6E 1PDAA 4R2CA 2YTQA 4DV6E 1YYOA 2RPCA 1A1KA 2EM7A 3BBGA 4GKKE 4K0KE 1TN9A 2RTXA 3T1YE 2UXBE 4WX9A 2EOMA 5LL6R 2YTIA 5A69A 2F8BA 2PRTA 2YZTA 3J81C 5DNYA 4JI1E 2EMZA 2EMXA 2YSPA 2CSHA 4HEIA 2UUAE 4X65E 2L2KB 4WYQB 1XNRE 2H36X 2NUFA 4DV7E 2MC6A 2YTOA 2EL5A 1HR0E 4TUIA 2V8QB 3J7AG 2B7VA 2NABA 2EM0A 2EOZA 2LV2A 2B3TB 4BCAA 2E1MA 2EMKA 1NCSA 4R2PA 4F54A 1JK1A 2N8XA 5IXMB 2EM4A 1AAYA 3H09A 4DR4E 1DQ3A 2EMWA 4KWYA 5A6AA 2DLQA 1T39A 2GLIA 4B3TE 1FKAE 2EP3A 4O5GA 2KONA 1ZR9A 4F9BB 4NZVA 4JV5E 2BB8A 4M30A 2EM5A 1IMUA 1ZAAC 2LUPB 3JU0A 4DV4E 1PKPA 5LMUE 1ZBQA 5FLXC 4ZYEA 1DI2A 2YU8A 2EOFA 5AE3A 3LMLA 2M4IA 2EPZA 2LE2A 3ZOQB 2YTPA 2DGCA 1X6FA 4IS1C 1T4OA 2DMIA 3THOB 4NXME 3BF2A 2NUEA 3T1HE 4DR7E 4IJDA 4F2JC 3C6MA 3DF6A 5AC5A 2ODRD 1UBDC 4JI5E 4WPYA 2VRDA 2ENCA 4R2QA 2YTJA 2WBUA 4LF6E 1YZ9A 1L4SA 2ELZA 2EN6A 2YTEA 2M1SA 2LMZA 1A1GA 1XNQE 4BMJA 4HTGA 2YRHA 2LBSB 1SR9A 4JI2E 2DB2A 3C4BA 4LF7E 4DV2E 4WSGA 2EOYA 2EPRA 4O4KA 5KL4A 4F6NA 3KZZA 2ZM6E 2EN8A 4JI3E 1IQSA 4OOGC 2YSOA 2LTSA 1XMOE 4M9VC 1A1IA 3TQMA 3ADIA 1T4LB 2B7TA 3HXLA 2L6MA 4P78A 4ZYDA 4WXCA 2UUBE 2DSYA 2RSMA 2EM6A 2EPOA 2A25A 2G7HA 4DUZE 2WCC3 5A2QC 1I94E 2YTGA 4MLVA 1XMQE 4BHBA 2EOOA 5KL5A 4X64E 4NHRA 3THNA 1STUA 5A6BD 2YRMA 3C6KA 4DV0E 1X49A 2V88A 4DV3E 2EMLA 2LO3A 3KWRA 5A6KA 5IT9C 1X5WA 2JOBA 5AE2A 3EPJA 1EH6A 2V87A 1YFHA 1IBKE 2EM2A 4WSPA 4ZYHA 2I13A 2L8TA 1RMDA 2JP9A 4M0VA 5T6JA 4M2ZA 4BC7A 1PJTA 2V83A 2EOQA 2L3CA 2MDRA 2EJ4A 5KL3A 4P7DA 2MKNA 2CT1A 2EL4A 5AASA 2KHXA 4LFAE 3ADGA 4DV5E 1UN6B 3J80C 1YPNA 3OMLA 1X48A 2L3JA 2NUGA 3UK3C 2GHFA 4RHBB 3HPZA 3QG5C 1G2DC 4YHHE 3F6HA 4DR6E 2EPPA 2LVHA 4X62E 4WXDA 3EQ1A 2ENAA 3JAMC 2D9HA 2EMBA 4LF4E 1G2FC 4B3RE 5KL6A 2VE7C 1BB8A 2EZ6A 5KL2A 3C4TA 3JTZA 2EOSA 4WFTA 1T38A 2VF1A 2LRSA 1QU6A 2HHHE 2ENHA 3MHSC 2JYAA 1T4NA 1N36E 2R76A 4BC9A 3KZYA 4TUGA 1RQ0A 4BHCA 2LT7A 1WHQA 4X66E 1IBLE 1GTKA 3K6QA 2HGHA 2EPLX 4R2AA 2EM3A 4AQYE 2UU9E 2EMFA 1MGTA 4KHPE 2EN4A 1X3CA 1NEIA 2KOUA 2EN7A 2ADRA 1J26A 3RMPA 5AC4A 2E72A 1BBOA 2V89A 2EMIA 3L00A 2YTDA 4JI8E 2HC5A 1YUIA 3EPKA 3VYYA 2FGGA 1TF6A 4OX9E 1IQOA 2LCEA 1YSAC 2JR1A 2YPNA 1SFEA 5KL7A 2M9AA 2JXPA 4O43A 4YY3E 1LLMC 3MHHC 1A1HA 4JI7E 1PJQA 3AV0A 3MSWA 2EMCA 3EPLA 4GKJE 2M7QA 2L2MA 2EM8A 2EQ3A 5TSEA 4R2RA 1EH8A 2GPIA 2LUQA 2R1FA 5F3WA 1GQEA 3HPSA 3IWBA 4LU9A 2EWLA 3EPHA 2DLKA 5AE1A 1Z1BA 2DRPA 2EN2A 3DJWA 2EPCA 2DMYA 2YTNA 2EPNA 4KZSA 2YWQA 1WHNA 1O0WA 3IWCA 5CFFE 1EKZA 1ZU1A 1FJGE 3F6GA
chains in the Genus database with same CATH topology

1IMUA 1L4SA 3TQMA 4HEIA 2RQLA 1N3GA 2YWQA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1IMU A;  1L4S A;  3TQM A;  4HEI A;  2RQL A;  1N3G A;  2YWQ A; 
#chains in the Genus database with same CATH topology
 2MDG A;  4BBY A;  4R2S A;  5A6B A;  2RS7 A;  2EOH A;  3HTX A;  4DV1 E;  2EMG A;  3OTO E;  1YYK A;  1BBG A;  4J8Z A;  4LTY A;  3VYX A;  4F6M A;  4LFB E;  4DR2 E;  2E5L E;  2EPM X;  4O24 A;  2MKD A;  1YYW A;  1ZBT A;  2ELY A;  1WRJ A;  2WBS A;  2EQ0 A;  2LJU A;  2N3H A;  2EN1 A;  4DMI A;  1X6E A;  3ADJ A;  4ZYG A;  2Q8U A;  1HNW E;  1IBM E;  2RS6 A;  2EQ1 A;  2B9D A;  2UUC E;  4R8O A;  1RC7 A;  4JYA E;  2EOI A;  4BS9 A;  2UXD E;  3IWD A;  2I9I A;  3HQ1 A;  4GZN C;  1P47 A;  1A1J A;  5BR8 E;  2EE8 A;  3J7Y p;  1KYQ A;  2RSI A;  3BID A;  4F9A B;  4F9C B;  4JI0 E;  2WBT A;  3ADL A;  2L2N A;  2K7I A;  4GEQ B;  2NA2 A;  5LMN E;  4JI4 E;  1HNX E;  1EH7 A;  1DGC A;  2BBG A;  2EPA A;  2JOX A;  2YTF A;  2EOE A;  4FK5 C;  4Q28 A;  3LLH A;  4DKK A;  2WZO A;  1WXR A;  2K4V A;  5IWA E;  4X8W A;  2JPA A;  5A6J A;  4R2D A;  3VHT B;  4LFC E;  4MLQ A;  4LF8 E;  2F4V E;  1X6H A;  2IHR 1;  1J5E E;  2RQL A;  2EOR A;  1GZ6 A;  1N32 E;  2MC5 A;  2L92 A;  4DUY E;  4NXN E;  2HJJ A;  1HNZ E;  4LF9 E;  4DR3 E;  4Q35 B;  1B69 A;  2EOX A;  2VQE E;  3M99 B;  5ADZ A;  2EPX A;  2L33 A;  1N33 E;  1AH5 A;  2EL6 A;  1YUJ A;  2JVA A;  4X9J A;  1N3G A;  1A1F A;  4LF5 E;  2V86 A;  1JK2 A;  1F2I G;  1WJP A;  3P1X A;  4B3M E;  4L5N C;  4R03 A;  2CPN A;  2ODR C;  1TF3 A;  1UIL A;  4DR5 E;  2EPU A;  2J7J A;  5LLQ A;  4DR1 E;  1KJK A;  2LJH A;  2EMH A;  1QNT A;  1PJS A;  4L8N A;  3BGH A;  4N4R B;  2LTR A;  2CTD A;  5IV8 B;  3AUZ A;  2JY9 A;  1N34 E;  2YU5 A;  4RH8 A;  2V85 A;  3VK6 A;  1MEY C;  2EM9 A;  1UHZ A;  4R2E A;  2EMA A;  2EPK X;  2FV4 B;  2DIX A;  2YRK A;  4I8O A;  2UXC E;  2EOJ A;  2FTX B;  1A1L A;  2JWO A;  2EN3 A;  2N3G A;  3ECR A;  2VQF E;  2EMY A;  2YT4 A;  4B3S E;  1X47 A;  3FIG A;  4JI6 E;  1PDA A;  4R2C A;  2YTQ A;  4DV6 E;  1YYO A;  2RPC A;  1A1K A;  2EM7 A;  3BBG A;  4GKK E;  4K0K E;  1TN9 A;  2RTX A;  3T1Y E;  2UXB E;  4WX9 A;  2EOM A;  5LL6 R;  2YTI A;  5A69 A;  2F8B A;  2PRT A;  2YZT A;  3J81 C;  5DNY A;  4JI1 E;  2EMZ A;  2EMX A;  2YSP A;  2CSH A;  4HEI A;  2UUA E;  4X65 E;  2L2K B;  4WYQ B;  1XNR E;  2H36 X;  2NUF A;  4DV7 E;  2MC6 A;  2YTO A;  2EL5 A;  1HR0 E;  4TUI A;  2V8Q B;  3J7A G;  2B7V A;  2NAB A;  2EM0 A;  2EOZ A;  2LV2 A;  2B3T B;  4BCA A;  2E1M A;  2EMK A;  1NCS A;  4R2P A;  4F54 A;  1JK1 A;  2N8X A;  5IXM B;  2EM4 A;  1AAY A;  3H09 A;  4DR4 E;  1DQ3 A;  2EMW A;  4KWY A;  5A6A A;  2DLQ A;  1T39 A;  2GLI A;  4B3T E;  1FKA E;  2EP3 A;  4O5G A;  2KON A;  1ZR9 A;  4F9B B;  4NZV A;  4JV5 E;  2BB8 A;  4M30 A;  2EM5 A;  1IMU A;  1ZAA C;  2LUP B;  3JU0 A;  4DV4 E;  1PKP A;  5LMU E;  1ZBQ A;  5FLX C;  4ZYE A;  1DI2 A;  2YU8 A;  2EOF A;  5AE3 A;  3LML A;  2M4I A;  2EPZ A;  2LE2 A;  3ZOQ B;  2YTP A;  2DGC A;  1X6F A;  4IS1 C;  1T4O A;  2DMI A;  3THO B;  4NXM E;  3BF2 A;  2NUE A;  3T1H E;  4DR7 E;  4IJD A;  4F2J C;  3C6M A;  3DF6 A;  5AC5 A;  2ODR D;  1UBD C;  4JI5 E;  4WPY A;  2VRD A;  2ENC A;  4R2Q A;  2YTJ A;  2WBU A;  4LF6 E;  1YZ9 A;  1L4S A;  2ELZ A;  2EN6 A;  2YTE A;  2M1S A;  2LMZ A;  1A1G A;  1XNQ E;  4BMJ A;  4HTG A;  2YRH A;  2LBS B;  1SR9 A;  4JI2 E;  2DB2 A;  3C4B A;  4LF7 E;  4DV2 E;  4WSG A;  2EOY A;  2EPR A;  4O4K A;  5KL4 A;  4F6N A;  3KZZ A;  2ZM6 E;  2EN8 A;  4JI3 E;  1IQS A;  4OOG C;  2YSO A;  2LTS A;  1XMO E;  4M9V C;  1A1I A;  3TQM A;  3ADI A;  1T4L B;  2B7T A;  3HXL A;  2L6M A;  4P78 A;  4ZYD A;  4WXC A;  2UUB E;  2DSY A;  2RSM A;  2EM6 A;  2EPO A;  2A25 A;  2G7H A;  4DUZ E;  2WCC 3;  5A2Q C;  1I94 E;  2YTG A;  4MLV A;  1XMQ E;  4BHB A;  2EOO A;  5KL5 A;  4X64 E;  4NHR A;  3THN A;  1STU A;  5A6B D;  2YRM A;  3C6K A;  4DV0 E;  1X49 A;  2V88 A;  4DV3 E;  2EML A;  2LO3 A;  3KWR A;  5A6K A;  5IT9 C;  1X5W A;  2JOB A;  5AE2 A;  3EPJ A;  1EH6 A;  2V87 A;  1YFH A;  1IBK E;  2EM2 A;  4WSP A;  4ZYH A;  2I13 A;  2L8T A;  1RMD A;  2JP9 A;  4M0V A;  5T6J A;  4M2Z A;  4BC7 A;  1PJT A;  2V83 A;  2EOQ A;  2L3C A;  2MDR A;  2EJ4 A;  5KL3 A;  4P7D A;  2MKN A;  2CT1 A;  2EL4 A;  5AAS A;  2KHX A;  4LFA E;  3ADG A;  4DV5 E;  1UN6 B;  3J80 C;  1YPN A;  3OML A;  1X48 A;  2L3J A;  2NUG A;  3UK3 C;  2GHF A;  4RHB B;  3HPZ A;  3QG5 C;  1G2D C;  4YHH E;  3F6H A;  4DR6 E;  2EPP A;  2LVH A;  4X62 E;  4WXD A;  3EQ1 A;  2ENA A;  3JAM C;  2D9H A;  2EMB A;  4LF4 E;  1G2F C;  4B3R E;  5KL6 A;  2VE7 C;  1BB8 A;  2EZ6 A;  5KL2 A;  3C4T A;  3JTZ A;  2EOS A;  4WFT A;  1T38 A;  2VF1 A;  2LRS A;  1QU6 A;  2HHH E;  2ENH A;  3MHS C;  2JYA A;  1T4N A;  1N36 E;  2R76 A;  4BC9 A;  3KZY A;  4TUG A;  1RQ0 A;  4BHC A;  2LT7 A;  1WHQ A;  4X66 E;  1IBL E;  1GTK A;  3K6Q A;  2HGH A;  2EPL X;  4R2A A;  2EM3 A;  4AQY E;  2UU9 E;  2EMF A;  1MGT A;  4KHP E;  2EN4 A;  1X3C A;  1NEI A;  2KOU A;  2EN7 A;  2ADR A;  1J26 A;  3RMP A;  5AC4 A;  2E72 A;  1BBO A;  2V89 A;  2EMI A;  3L00 A;  2YTD A;  4JI8 E;  2HC5 A;  1YUI A;  3EPK A;  3VYY A;  2FGG A;  1TF6 A;  4OX9 E;  1IQO A;  2LCE A;  1YSA C;  2JR1 A;  2YPN A;  1SFE A;  5KL7 A;  2M9A A;  2JXP A;  4O43 A;  4YY3 E;  1LLM C;  3MHH C;  1A1H A;  4JI7 E;  1PJQ A;  3AV0 A;  3MSW A;  2EMC A;  3EPL A;  4GKJ E;  2M7Q A;  2L2M A;  2EM8 A;  2EQ3 A;  5TSE A;  4R2R A;  1EH8 A;  2GPI A;  2LUQ A;  2R1F A;  5F3W A;  1GQE A;  3HPS A;  3IWB A;  4LU9 A;  2EWL A;  3EPH A;  2DLK A;  5AE1 A;  1Z1B A;  2DRP A;  2EN2 A;  3DJW A;  2EPC A;  2DMY A;  2YTN A;  2EPN A;  4KZS A;  2YWQ A;  1WHN A;  1O0W A;  3IWC A;  5CFF E;  1EKZ A;  1ZU1 A;  1FJG E;  3F6G A; 
#chains in the Genus database with same CATH homology
 1IMU A;  1L4S A;  3TQM A;  4HEI A;  2RQL A;  1N3G A;  2YWQ A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2RQLA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations