2YWQA

Crystal structure of thermus thermophilus protein y n-terminal domain
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
95
structure length
89
Chain Sequence
MNIYKLIGRNLEITDAIRDYVEKKLARLDRYQDGELMAKVVLSLAGKARAEIQVDLPGGLVRVEEEDADLYAAIDRAVDRLETQVKRFR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Thermus thermophilus Protein Y N-terminal domain
rcsb
molecule tags Ribosomal protein
source organism Thermus thermophilus
molecule keywords Ribosomal subunit interface protein
total genus 23
structure length 89
sequence length 95
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-04-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.100 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Ribosome hibernation promotion factor-like 2ywqA00
2RQLA 1L4SA 4HEIA 1IMUA 1N3GA 3TQMA 2YWQA
chains in the Genus database with same CATH superfamily
3EQ1A 2LTSA 1L4SA 2R1FA 4TUIA 2EOYA 1LLMC 2EPLX 5BR8E 4R2PA 2G7HA 1Z1BA 4KWYA 1WRJA 3HTXA 2EL4A 2EOSA 4R2AA 2I9IA 4GKKE 3DJWA 2Q8UA 4WPYA 1T39A 2H36X 2EM4A 2EMZA 4R8OA 2EMIA 3KZYA 5CFFE 2ADRA 1EH8A 1UILA 2EPAA 2UXDE 2EM0A 2L8TA 2YSOA 2EOQA 2NA2A 1N36E 4JI0E 4X64E 2JVAA 3MHSC 4JI1E 2LUPB 2EPOA 2ELYA 4LF8E 2V89A 4WXDA 5KL3A 2LO3A 1YYWA 1T4OA 2EPKX 2JOXA 2UU9E 1STUA 2L2MA 2VQFE 5TSEA 3THNA 3P1XA 2ZM6E 4DV7E 3HXLA 3ECRA 4BC7A 4OOGC 2YTDA 4BC9A 1UBDC 2EOXA 1X48A 1WHNA 4AQYE 2MKNA 2FV4B 2EM9A 5FLXC 1WXRA 2EQ1A 4DUYE 4Q28A 5LMNE 1TF6A 4NXME 2UUCE 1HNWE 2L33A 1HNZE 1HNXE 4X66E 3RMPA 2J7JA 2EPMX 3HPZA 5KL5A 1HR0E 4JI4E 1IMUA 2F4VE 2GPIA 3TQMA 1QU6A 2YRMA 2B3TB 4BS9A 2F8BA 1PDAA 2VE7C 1DI2A 1X5WA 4BHBA 5F3WA 2L3CA 2YTGA 4WSGA 1X47A 5AASA 1YFHA 2V88A 4NHRA 5A6KA 4ZYGA 4P78A 3MHHC 2V86A 1ZBQA 3IWDA 4WXCA 5KL6A 4R2DA 1RMDA 2DIXA 1DGCA 3L00A 3F6GA 2EPCA 2CT1A 4K0KE 1N34E 2JP9A 1QNTA 2EOFA 2L2KB 4NZVA 2EPPA 4F9CB 2YTEA 2EQ0A 2HGHA 1JK2A 3T1HE 2ENAA 4O5GA 2EMHA 4DV1E 4N4RB 4L8NA 2KOUA 3THOB 2EN8A 2EM7A 2IHR1 2DSYA 3VK6A 4DV5E 2EOEA 4IJDA 1T4LB 2HJJA 2WBUA 2DMYA 4JI5E 1MEYC 2B7TA 4LF9E 2EN2A 3JTZA 2LCEA 3JU0A 5A6JA 2LT7A 2E5LE 2V8QB 2MDGA 2EOJA 4Q35B 1MGTA 4DV3E 1BB8A 3LLHA 4J8ZA 5IT9C 1PJTA 2WBTA 4I8OA 2YZTA 3KZZA 2B9DA 4JI6E 2YTNA 2JPAA 4DR3E 4GKJE 1EH6A 2DRPA 3J7AG 3ADJA 1NEIA 4F9AB 2EMGA 2EM5A 2K7IA 4LFAE 2K4VA 2L6MA 1XMOE 4DR5E 3BGHA 5A6AA 2R76A 3HPSA 2M9AA 1SFEA 4LU9A 2YTFA 2EOIA 5IXMB 2EQ3A 2NUEA 2V85A 1N33E 1KYQA 2MC5A 3LMLA 3C4TA 1YUJA 1XMQE 3KWRA 2EMKA 4X62E 1A1JA 4BHCA 1EH7A 1XNQE 1RC7A 3C4BA 4L5NC 4JYAE 1A1HA 1TN9A 1FKAE 4BBYA 2EOHA 2EPNA 2EMWA 3AV0A 4O43A 4X8WA 2NUGA 4JV5E 1UHZA 1EKZA 4M0VA 2WBSA 5AC4A 4F6NA 1XNRE 3BIDA 2NABA 2YRKA 4LF6E 2LJHA 4LF4E 2LUQA 3MSWA 2RSMA 3IWBA 2L2NA 2CTDA 4X9JA 1X3CA 2EPRA 5KL2A 5IV8B 3BBGA 1I94E 4R03A 3T1YE 2EMFA 2M1SA 2ODRD 2FTXB 4F54A 3EPKA 2JR1A 2WZOA 4KHPE 4P7DA 3VYYA 3QG5C 1IQOA 2DMIA 2LVHA 4JI8E 1YPNA 1X6EA 2LBSB 2L3JA 2NUFA 1DQ3A 2M4IA 4DKKA 4LF7E 3H09A 3VYXA 5A69A 2LE2A 2VQEE 4WX9A 4DUZE 1N3GA 1IBME 3ZOQB 5IWAE 4DV0E 1WHQA 3HQ1A 4WFTA 4WYQB 2YU5A 1J5EE 1WJPA 2EM6A 3J80C 2E1MA 1BBGA 2EL5A 2LJUA 4R2SA 4O24A 2MDRA 2EJ4A 4DV6E 3OMLA 4DR7E 2YTJA 2MKDA 2MC6A 4NXNE 2YRHA 1A1GA 2RQLA 1G2DC 4LFBE 4B3ME 2EPUA 2EM3A 2UXBE 4BCAA 5LLQA 2GLIA 5KL7A 2HC5A 4LTYA 4X65E 2LRSA 2DGCA 5T6JA 4R2QA 2EPXA 2WCC3 4WSPA 1ZR9A 4JI7E 2RS6A 5A6BA 2ENHA 2YTIA 2ELZA 4HTGA 2CSHA 4RH8A 4B3TE 1O0WA 4DV2E 4DV4E 4B3SE 2M7QA 3K6QA 2YU8A 4DMIA 3F6HA 2UUBE 2EM8A 4YY3E 2EWLA 1YSAC 2JY9A 5KL4A 2L92A 1JK1A 2V83A 3M99B 2EMYA 1YYOA 4R2RA 1PKPA 4GEQB 4GZNC 2PRTA 2RPCA 2BB8A 2BBGA 3AUZA 2EPZA 1IBLE 4M2ZA 2GHFA 3J81C 1X49A 4B3RE 3OTOE 4DR4E 1KJKA 3EPJA 1J26A 1ZAAC 3C6KA 2CPNA 5DNYA 2I13A 2KHXA 4KZSA 2EL6A 1X6HA 4F6MA 2EOZA 2EN7A 4ZYDA 1A1LA 2EMLA 2RSIA 3ADIA 1AAYA 2EN3A 1B69A 1TF3A 1A1IA 4LFCE 2EN6A 4OX9E 2DLKA 3EPLA 2EZ6A 4LF5E 4RHBB 1ZBTA 2EMCA 4DR6E 2KONA 2EMAA 1IBKE 2N3HA 3FIGA 2D9HA 1GQEA 4BMJA 1X6FA 2JOBA 4IS1C 3BF2A 4TUGA 3DF6A 4JI2E 3ADLA 1GTKA 2VF1A 4ZYEA 4JI3E 4YHHE 2UUAE 4M30A 2JXPA 2EOOA 2EN1A 2EE8A 2YPNA 2LTRA 4DR2E 2JYAA 2A25A 2EMBA 2E72A 2B7VA 2RS7A 1NCSA 2YTQA 2VRDA 3C6MA 4O4KA 2EOMA 1F2IG 4ZYHA 1N32E 2EN4A 5AE3A 1GZ6A 1G2FC 2N3GA 2YT4A 4MLQA 1A1FA 1A1KA 2HHHE 2FGGA 1UN6B 1YUIA 5LL6R 4MLVA 2EMXA 4HEIA 1P47A 4FK5C 5A2QC 2EP3A 5LMUE 1BBOA 4F9BB 2DB2A 2LMZA 2N8XA 5AC5A 4M9VC 1AH5A 3VHTB 1PJSA 1T38A 2YTOA 3UK3C 3JAMC 4R2CA 2ENCA 2LV2A 3IWCA 3ADGA 1ZU1A 2DLQA 4DR1E 2YTPA 5AE2A 3EPHA 2EM2A 5A6BD 2YSPA 2UXCE 5AE1A 4R2EA 2EORA 1SR9A 4F2JC 1IQSA 2ODRC 2V87A 1T4NA 3J7Yp 2YWQA 1YZ9A 1RQ0A 1YYKA 1FJGE 2RTXA 2JWOA 5ADZA 1PJQA
chains in the Genus database with same CATH topology
2RQLA 1L4SA 4HEIA 1IMUA 1N3GA 3TQMA 2YWQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RQL A;  1L4S A;  4HEI A;  1IMU A;  1N3G A;  3TQM A;  2YWQ A; 
#chains in the Genus database with same CATH topology
 3EQ1 A;  2LTS A;  1L4S A;  2R1F A;  4TUI A;  2EOY A;  1LLM C;  2EPL X;  5BR8 E;  4R2P A;  2G7H A;  1Z1B A;  4KWY A;  1WRJ A;  3HTX A;  2EL4 A;  2EOS A;  4R2A A;  2I9I A;  4GKK E;  3DJW A;  2Q8U A;  4WPY A;  1T39 A;  2H36 X;  2EM4 A;  2EMZ A;  4R8O A;  2EMI A;  3KZY A;  5CFF E;  2ADR A;  1EH8 A;  1UIL A;  2EPA A;  2UXD E;  2EM0 A;  2L8T A;  2YSO A;  2EOQ A;  2NA2 A;  1N36 E;  4JI0 E;  4X64 E;  2JVA A;  3MHS C;  4JI1 E;  2LUP B;  2EPO A;  2ELY A;  4LF8 E;  2V89 A;  4WXD A;  5KL3 A;  2LO3 A;  1YYW A;  1T4O A;  2EPK X;  2JOX A;  2UU9 E;  1STU A;  2L2M A;  2VQF E;  5TSE A;  3THN A;  3P1X A;  2ZM6 E;  4DV7 E;  3HXL A;  3ECR A;  4BC7 A;  4OOG C;  2YTD A;  4BC9 A;  1UBD C;  2EOX A;  1X48 A;  1WHN A;  4AQY E;  2MKN A;  2FV4 B;  2EM9 A;  5FLX C;  1WXR A;  2EQ1 A;  4DUY E;  4Q28 A;  5LMN E;  1TF6 A;  4NXM E;  2UUC E;  1HNW E;  2L33 A;  1HNZ E;  1HNX E;  4X66 E;  3RMP A;  2J7J A;  2EPM X;  3HPZ A;  5KL5 A;  1HR0 E;  4JI4 E;  1IMU A;  2F4V E;  2GPI A;  3TQM A;  1QU6 A;  2YRM A;  2B3T B;  4BS9 A;  2F8B A;  1PDA A;  2VE7 C;  1DI2 A;  1X5W A;  4BHB A;  5F3W A;  2L3C A;  2YTG A;  4WSG A;  1X47 A;  5AAS A;  1YFH A;  2V88 A;  4NHR A;  5A6K A;  4ZYG A;  4P78 A;  3MHH C;  2V86 A;  1ZBQ A;  3IWD A;  4WXC A;  5KL6 A;  4R2D A;  1RMD A;  2DIX A;  1DGC A;  3L00 A;  3F6G A;  2EPC A;  2CT1 A;  4K0K E;  1N34 E;  2JP9 A;  1QNT A;  2EOF A;  2L2K B;  4NZV A;  2EPP A;  4F9C B;  2YTE A;  2EQ0 A;  2HGH A;  1JK2 A;  3T1H E;  2ENA A;  4O5G A;  2EMH A;  4DV1 E;  4N4R B;  4L8N A;  2KOU A;  3THO B;  2EN8 A;  2EM7 A;  2IHR 1;  2DSY A;  3VK6 A;  4DV5 E;  2EOE A;  4IJD A;  1T4L B;  2HJJ A;  2WBU A;  2DMY A;  4JI5 E;  1MEY C;  2B7T A;  4LF9 E;  2EN2 A;  3JTZ A;  2LCE A;  3JU0 A;  5A6J A;  2LT7 A;  2E5L E;  2V8Q B;  2MDG A;  2EOJ A;  4Q35 B;  1MGT A;  4DV3 E;  1BB8 A;  3LLH A;  4J8Z A;  5IT9 C;  1PJT A;  2WBT A;  4I8O A;  2YZT A;  3KZZ A;  2B9D A;  4JI6 E;  2YTN A;  2JPA A;  4DR3 E;  4GKJ E;  1EH6 A;  2DRP A;  3J7A G;  3ADJ A;  1NEI A;  4F9A B;  2EMG A;  2EM5 A;  2K7I A;  4LFA E;  2K4V A;  2L6M A;  1XMO E;  4DR5 E;  3BGH A;  5A6A A;  2R76 A;  3HPS A;  2M9A A;  1SFE A;  4LU9 A;  2YTF A;  2EOI A;  5IXM B;  2EQ3 A;  2NUE A;  2V85 A;  1N33 E;  1KYQ A;  2MC5 A;  3LML A;  3C4T A;  1YUJ A;  1XMQ E;  3KWR A;  2EMK A;  4X62 E;  1A1J A;  4BHC A;  1EH7 A;  1XNQ E;  1RC7 A;  3C4B A;  4L5N C;  4JYA E;  1A1H A;  1TN9 A;  1FKA E;  4BBY A;  2EOH A;  2EPN A;  2EMW A;  3AV0 A;  4O43 A;  4X8W A;  2NUG A;  4JV5 E;  1UHZ A;  1EKZ A;  4M0V A;  2WBS A;  5AC4 A;  4F6N A;  1XNR E;  3BID A;  2NAB A;  2YRK A;  4LF6 E;  2LJH A;  4LF4 E;  2LUQ A;  3MSW A;  2RSM A;  3IWB A;  2L2N A;  2CTD A;  4X9J A;  1X3C A;  2EPR A;  5KL2 A;  5IV8 B;  3BBG A;  1I94 E;  4R03 A;  3T1Y E;  2EMF A;  2M1S A;  2ODR D;  2FTX B;  4F54 A;  3EPK A;  2JR1 A;  2WZO A;  4KHP E;  4P7D A;  3VYY A;  3QG5 C;  1IQO A;  2DMI A;  2LVH A;  4JI8 E;  1YPN A;  1X6E A;  2LBS B;  2L3J A;  2NUF A;  1DQ3 A;  2M4I A;  4DKK A;  4LF7 E;  3H09 A;  3VYX A;  5A69 A;  2LE2 A;  2VQE E;  4WX9 A;  4DUZ E;  1N3G A;  1IBM E;  3ZOQ B;  5IWA E;  4DV0 E;  1WHQ A;  3HQ1 A;  4WFT A;  4WYQ B;  2YU5 A;  1J5E E;  1WJP A;  2EM6 A;  3J80 C;  2E1M A;  1BBG A;  2EL5 A;  2LJU A;  4R2S A;  4O24 A;  2MDR A;  2EJ4 A;  4DV6 E;  3OML A;  4DR7 E;  2YTJ A;  2MKD A;  2MC6 A;  4NXN E;  2YRH A;  1A1G A;  2RQL A;  1G2D C;  4LFB E;  4B3M E;  2EPU A;  2EM3 A;  2UXB E;  4BCA A;  5LLQ A;  2GLI A;  5KL7 A;  2HC5 A;  4LTY A;  4X65 E;  2LRS A;  2DGC A;  5T6J A;  4R2Q A;  2EPX A;  2WCC 3;  4WSP A;  1ZR9 A;  4JI7 E;  2RS6 A;  5A6B A;  2ENH A;  2YTI A;  2ELZ A;  4HTG A;  2CSH A;  4RH8 A;  4B3T E;  1O0W A;  4DV2 E;  4DV4 E;  4B3S E;  2M7Q A;  3K6Q A;  2YU8 A;  4DMI A;  3F6H A;  2UUB E;  2EM8 A;  4YY3 E;  2EWL A;  1YSA C;  2JY9 A;  5KL4 A;  2L92 A;  1JK1 A;  2V83 A;  3M99 B;  2EMY A;  1YYO A;  4R2R A;  1PKP A;  4GEQ B;  4GZN C;  2PRT A;  2RPC A;  2BB8 A;  2BBG A;  3AUZ A;  2EPZ A;  1IBL E;  4M2Z A;  2GHF A;  3J81 C;  1X49 A;  4B3R E;  3OTO E;  4DR4 E;  1KJK A;  3EPJ A;  1J26 A;  1ZAA C;  3C6K A;  2CPN A;  5DNY A;  2I13 A;  2KHX A;  4KZS A;  2EL6 A;  1X6H A;  4F6M A;  2EOZ A;  2EN7 A;  4ZYD A;  1A1L A;  2EML A;  2RSI A;  3ADI A;  1AAY A;  2EN3 A;  1B69 A;  1TF3 A;  1A1I A;  4LFC E;  2EN6 A;  4OX9 E;  2DLK A;  3EPL A;  2EZ6 A;  4LF5 E;  4RHB B;  1ZBT A;  2EMC A;  4DR6 E;  2KON A;  2EMA A;  1IBK E;  2N3H A;  3FIG A;  2D9H A;  1GQE A;  4BMJ A;  1X6F A;  2JOB A;  4IS1 C;  3BF2 A;  4TUG A;  3DF6 A;  4JI2 E;  3ADL A;  1GTK A;  2VF1 A;  4ZYE A;  4JI3 E;  4YHH E;  2UUA E;  4M30 A;  2JXP A;  2EOO A;  2EN1 A;  2EE8 A;  2YPN A;  2LTR A;  4DR2 E;  2JYA A;  2A25 A;  2EMB A;  2E72 A;  2B7V A;  2RS7 A;  1NCS A;  2YTQ A;  2VRD A;  3C6M A;  4O4K A;  2EOM A;  1F2I G;  4ZYH A;  1N32 E;  2EN4 A;  5AE3 A;  1GZ6 A;  1G2F C;  2N3G A;  2YT4 A;  4MLQ A;  1A1F A;  1A1K A;  2HHH E;  2FGG A;  1UN6 B;  1YUI A;  5LL6 R;  4MLV A;  2EMX A;  4HEI A;  1P47 A;  4FK5 C;  5A2Q C;  2EP3 A;  5LMU E;  1BBO A;  4F9B B;  2DB2 A;  2LMZ A;  2N8X A;  5AC5 A;  4M9V C;  1AH5 A;  3VHT B;  1PJS A;  1T38 A;  2YTO A;  3UK3 C;  3JAM C;  4R2C A;  2ENC A;  2LV2 A;  3IWC A;  3ADG A;  1ZU1 A;  2DLQ A;  4DR1 E;  2YTP A;  5AE2 A;  3EPH A;  2EM2 A;  5A6B D;  2YSP A;  2UXC E;  5AE1 A;  4R2E A;  2EOR A;  1SR9 A;  4F2J C;  1IQS A;  2ODR C;  2V87 A;  1T4N A;  3J7Y p;  2YWQ A;  1YZ9 A;  1RQ0 A;  1YYK A;  1FJG E;  2RTX A;  2JWO A;  5ADZ A;  1PJQ A; 
#chains in the Genus database with same CATH homology
 2RQL A;  1L4S A;  4HEI A;  1IMU A;  1N3G A;  3TQM A;  2YWQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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