3BID | Genus

Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	58
structure length	58
Chain Sequence	MYFEIYKDAKGEYRWRLKAANHEIIAQGEGYTSKQNCQHAVDLLKSTTAATPVKEVLE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Neisseria meningitidis mc58
publication title	Crystal structure of the NMB1088 protein from Neisseria meningitidis. rcsb
molecule keywords	UPF0339 protein NMB1088
total genus	9
structure length	58
sequence length	58
chains with identical sequence	B, C, D, E, F, G, H
ec nomenclature
pdb deposition date	2007-11-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07411	DUF1508	Domain of unknown function (DUF1508)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.160.160	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	YegP-like	3bidA01

3BIDA 2K7IA
chains in the Genus database with same CATH superfamily

4X62E 4DV7E 4JI5E 2EOIA 2WBTA 4BC9A 4X65E 1YPNA 4WXDA 1YUJA 4F9AB 2EJ4A 2FV4B 3HPSA 1HNWE 1A1GA 4BHBA 1EH8A 3MHHC 3J80C 2K4VA 1MEYC 2DIXA 1WJPA 4DV6E 1X3CA 1B69A 2LT7A 1YYOA 4Q28A 4KWYA 1QNTA 3VHTB 2EOSA 2RS6A 2DRPA 2EWLA 4LFAE 2KHXA 2V83A 3M99B 2LUPB 5FLXC 4HEIA 1KJKA 2EOHA 4WSPA 2UXBE 1IQSA 4ZYEA 4WYQB 5IV8B 4JI1E 1IBKE 2CT1A 2IHR1 4LU9A 4DUZE 4JI3E 3VYXA 2D9HA 2EOOA 1XNRE 4L5NC 2MDRA 1YFHA 4KZSA 2N3HA 4RH8A 1QU6A 1WHQA 2EPKX 4NZVA 2L3JA 5LMUE 1EKZA 2JYAA 4Q35B 4ZYGA 1A1IA 4JI0E 2VQFE 2GLIA 3IWDA 2NUGA 2L2MA 1N34E 2KONA 2EM9A 5KL6A 3IWCA 2N3GA 5AE3A 4AQYE 1LLMC 3JTZA 4LF8E 2EE8A 2RSMA 1IBME 3OMLA 2EM4A 4DR5E 3T1YE 2KOUA 4GKJE 3J7AG 1DI2A 2DMIA 2HJJA 2YRMA 4F54A 2EN2A 2EOXA 2Q8UA 3ZOQB 5DNYA 2EPZA 1YYKA 4LFCE 2I9IA 2V88A 2BB8A 1T38A 5A6BA 2ODRD 4R2AA 2M9AA 2L2NA 1NEIA 2YTGA 2EPMX 4DR7E 2LJHA 2ENCA 2JVAA 4R2EA 2DLKA 4R2SA 2ODRC 4JI7E 2VF1A 4X9JA 1Z1BA 1A1LA 1RC7A 5A6AA 4TUGA 2YU8A 2LVHA 2M1SA 2CTDA 1PJTA 3MHSC 4WX9A 2EMKA 2YTOA 5AC5A 2EN1A 1J26A 3K6QA 2EMWA 2G7HA 2LBSB 1J5EE 2L33A 2L6MA 5A6KA 5A6BD 2BBGA 4B3SE 2YTPA 3IWBA 4R8OA 4DR3E 3EPHA 4LF7E 2FTXB 2JOBA 4F9CB 1FKAE 1XNQE 4LTYA 2B9DA 5TSEA 2EN4A 2UUBE 3HQ1A 2JXPA 3J7Yp 2EPRA 2LTRA 4TUIA 3UK3C 4B3TE 3BF2A 3AV0A 4JI4E 1N33E 2WZOA 4F9BB 1G2DC 2EN8A 2HHHE 2YTEA 4DR4E 2YT4A 2DSYA 1WHNA 2EMGA 2MKNA 1IQOA 4P7DA 4R2QA 2GPIA 1HNXE 4MLVA 1ZAAC 4ZYHA 2YTIA 4DV5E 2LV2A 2VE7C 4DR6E 1T4OA 1XMOE 4J8ZA 1UBDC 1ZBQA 3C4BA 4BC7A 1X6FA 1WXRA 1G2FC 2LTSA 5AASA 3DF6A 1AAYA 1UHZA 2EM8A 5T6JA 4NXME 4BS9A 1DQ3A 2YRKA 2L3CA 2FGGA 4O5GA 5IT9C 3J81C 3C6KA 2B7TA 2EMBA 4IJDA 4WSGA 2R1FA 4F6NA 2EL5A 3BIDA 2JWOA 4DV4E 2VRDA 2B3TB 2RS7A 4R2CA 1IBLE 3F6GA 4R03A 1O0WA 4M2ZA 4OX9E 2ELZA 2RSIA 1X5WA 3KWRA 3ECRA 1IMUA 2EOQA 2V87A 2V86A 5KL2A 2V89A 1X49A 2EMIA 2YTFA 3F6HA 1T39A 3HPZA 1I94E 2F8BA 3JU0A 1UN6B 2YTNA 4X64E 2LO3A 2M7QA 2L8TA 4F6MA 2EPAA 1X6EA 2F4VE 2EMFA 2LCEA 1TF3A 1HR0E 2EPXA 2DB2A 5A69A 4R2RA 2EMZA 1F2IG 1A1HA 3C4TA 1HNZE 1BBGA 3LMLA 4GZNC 1WRJA 5AE1A 3HXLA 1EH7A 2EQ1A 4DV1E 2EM0A 1YSAC 2E5LE 4WXCA 4JYAE 5KL5A 3P1XA 2LUQA 4DV3E 2MC6A 3TQMA 2EOZA 2EL6A 1A1JA 2ADRA 4F2JC 2HGHA 4B3RE 3T1HE 2YTDA 2EN3A 2YSPA 2V8QB 5KL4A 1PJSA 1RMDA 4B3ME 3AUZA 2CPNA 5CFFE 3FIGA 2WBSA 4JI8E 4GKKE 5KL7A 5AC4A 1GZ6A 2EM7A 2EQ0A 2EMLA 2RTXA 3DJWA 2M4IA 4O4KA 1X6HA 4N4RB 1NCSA 2ELYA 1TF6A 2EM5A 4WPYA 2ENHA 4NXNE 4BBYA 4MLQA 2NABA 2YPNA 3L00A 2EM3A 2EOEA 2JP9A 4LFBE 2MKDA 3ADJA 2RPCA 3BGHA 4LF6E 2EPLX 1P47A 2UU9E 4WFTA 2WCC3 2E72A 1GQEA 4M30A 2EOMA 3C6MA 1JK1A 2EOFA 5AE2A 4O24A 1SFEA 4OOGC 2MC5A 1FJGE 1T4NA 1ZR9A 2LE2A 2EMAA 4JI6E 2JY9A 2EM2A 1YZ9A 2UUAE 2ZM6E 2EPPA 1N36E 2J7JA 1TN9A 1GTKA 2YZTA 2UUCE 2YTQA 2PRTA 2E1MA 4DR2E 2H36X 2GHFA 1AH5A 4RHBB 2LJUA 4K0KE 2EMXA 4JI2E 2R76A 1PKPA 1L4SA 2JOXA 1T4LB 4X66E 2K7IA 2RQLA 2EPOA 5LL6R 4M0VA 2N8XA 4BCAA 3EQ1A 3KZZA 4IS1C 4YHHE 3RMPA 2EL4A 2L2KB 4KHPE 3THOB 1PDAA 1X47A 2MDGA 3H09A 1YYWA 2DLQA 5F3WA 2CSHA 4DKKA 1BBOA 1STUA 5IWAE 2L92A 2EN6A 4GEQB 1RQ0A 3VK6A 1EH6A 3VYYA 4FK5C 4DV0E 2EOYA 5ADZA 4BMJA 2EOJA 4DUYE 2NUFA 1PJQA 4NHRA 2JR1A 2V85A 2EN7A 2YRHA 4LF4E 3LLHA 2EM6A 2VQEE 2YU5A 4X8WA 3EPKA 2B7VA 3ADIA 2EPUA 2EQ3A 2EMYA 2NA2A 2JPAA 3QG5C 1ZU1A 1ZBTA 1N3GA 4LF9E 2A25A 4R2DA 2WBUA 1SR9A 4DR1E 2DMYA 2YSOA 1DGCA 4JV5E 2EZ6A 4O43A 3HTXA 2I13A 2NUEA 2EPCA 2EMCA 1N32E 2LMZA 2HC5A 5BR8E 1YUIA 2ENAA 1A1FA 3EPLA 4R2PA 3EPJA 1MGTA 5A6JA 2EMHA 2UXCE 4P78A 5KL3A 5LLQA 3THNA 4DV2E 4BHCA 5IXMB 4M9VC 2LRSA 4ZYDA 5A2QC 2EP3A 1A1KA 3ADGA 1X48A 2EORA 3KZYA 2YWQA 3MSWA 4YY3E 4DMIA 4I8OA 2EPNA 4L8NA 1KYQA 3OTOE 5LMNE 1UILA 2UXDE 3ADLA 1JK2A 1BB8A 1XMQE 2DGCA 3JAMC 4HTGA 3BBGA 2YTJA 4LF5E
chains in the Genus database with same CATH topology

3BIDA 2K7IA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3BID A;  2K7I A; 
#chains in the Genus database with same CATH topology
 4X62 E;  4DV7 E;  4JI5 E;  2EOI A;  2WBT A;  4BC9 A;  4X65 E;  1YPN A;  4WXD A;  1YUJ A;  4F9A B;  2EJ4 A;  2FV4 B;  3HPS A;  1HNW E;  1A1G A;  4BHB A;  1EH8 A;  3MHH C;  3J80 C;  2K4V A;  1MEY C;  2DIX A;  1WJP A;  4DV6 E;  1X3C A;  1B69 A;  2LT7 A;  1YYO A;  4Q28 A;  4KWY A;  1QNT A;  3VHT B;  2EOS A;  2RS6 A;  2DRP A;  2EWL A;  4LFA E;  2KHX A;  2V83 A;  3M99 B;  2LUP B;  5FLX C;  4HEI A;  1KJK A;  2EOH A;  4WSP A;  2UXB E;  1IQS A;  4ZYE A;  4WYQ B;  5IV8 B;  4JI1 E;  1IBK E;  2CT1 A;  2IHR 1;  4LU9 A;  4DUZ E;  4JI3 E;  3VYX A;  2D9H A;  2EOO A;  1XNR E;  4L5N C;  2MDR A;  1YFH A;  4KZS A;  2N3H A;  4RH8 A;  1QU6 A;  1WHQ A;  2EPK X;  4NZV A;  2L3J A;  5LMU E;  1EKZ A;  2JYA A;  4Q35 B;  4ZYG A;  1A1I A;  4JI0 E;  2VQF E;  2GLI A;  3IWD A;  2NUG A;  2L2M A;  1N34 E;  2KON A;  2EM9 A;  5KL6 A;  3IWC A;  2N3G A;  5AE3 A;  4AQY E;  1LLM C;  3JTZ A;  4LF8 E;  2EE8 A;  2RSM A;  1IBM E;  3OML A;  2EM4 A;  4DR5 E;  3T1Y E;  2KOU A;  4GKJ E;  3J7A G;  1DI2 A;  2DMI A;  2HJJ A;  2YRM A;  4F54 A;  2EN2 A;  2EOX A;  2Q8U A;  3ZOQ B;  5DNY A;  2EPZ A;  1YYK A;  4LFC E;  2I9I A;  2V88 A;  2BB8 A;  1T38 A;  5A6B A;  2ODR D;  4R2A A;  2M9A A;  2L2N A;  1NEI A;  2YTG A;  2EPM X;  4DR7 E;  2LJH A;  2ENC A;  2JVA A;  4R2E A;  2DLK A;  4R2S A;  2ODR C;  4JI7 E;  2VF1 A;  4X9J A;  1Z1B A;  1A1L A;  1RC7 A;  5A6A A;  4TUG A;  2YU8 A;  2LVH A;  2M1S A;  2CTD A;  1PJT A;  3MHS C;  4WX9 A;  2EMK A;  2YTO A;  5AC5 A;  2EN1 A;  1J26 A;  3K6Q A;  2EMW A;  2G7H A;  2LBS B;  1J5E E;  2L33 A;  2L6M A;  5A6K A;  5A6B D;  2BBG A;  4B3S E;  2YTP A;  3IWB A;  4R8O A;  4DR3 E;  3EPH A;  4LF7 E;  2FTX B;  2JOB A;  4F9C B;  1FKA E;  1XNQ E;  4LTY A;  2B9D A;  5TSE A;  2EN4 A;  2UUB E;  3HQ1 A;  2JXP A;  3J7Y p;  2EPR A;  2LTR A;  4TUI A;  3UK3 C;  4B3T E;  3BF2 A;  3AV0 A;  4JI4 E;  1N33 E;  2WZO A;  4F9B B;  1G2D C;  2EN8 A;  2HHH E;  2YTE A;  4DR4 E;  2YT4 A;  2DSY A;  1WHN A;  2EMG A;  2MKN A;  1IQO A;  4P7D A;  4R2Q A;  2GPI A;  1HNX E;  4MLV A;  1ZAA C;  4ZYH A;  2YTI A;  4DV5 E;  2LV2 A;  2VE7 C;  4DR6 E;  1T4O A;  1XMO E;  4J8Z A;  1UBD C;  1ZBQ A;  3C4B A;  4BC7 A;  1X6F A;  1WXR A;  1G2F C;  2LTS A;  5AAS A;  3DF6 A;  1AAY A;  1UHZ A;  2EM8 A;  5T6J A;  4NXM E;  4BS9 A;  1DQ3 A;  2YRK A;  2L3C A;  2FGG A;  4O5G A;  5IT9 C;  3J81 C;  3C6K A;  2B7T A;  2EMB A;  4IJD A;  4WSG A;  2R1F A;  4F6N A;  2EL5 A;  3BID A;  2JWO A;  4DV4 E;  2VRD A;  2B3T B;  2RS7 A;  4R2C A;  1IBL E;  3F6G A;  4R03 A;  1O0W A;  4M2Z A;  4OX9 E;  2ELZ A;  2RSI A;  1X5W A;  3KWR A;  3ECR A;  1IMU A;  2EOQ A;  2V87 A;  2V86 A;  5KL2 A;  2V89 A;  1X49 A;  2EMI A;  2YTF A;  3F6H A;  1T39 A;  3HPZ A;  1I94 E;  2F8B A;  3JU0 A;  1UN6 B;  2YTN A;  4X64 E;  2LO3 A;  2M7Q A;  2L8T A;  4F6M A;  2EPA A;  1X6E A;  2F4V E;  2EMF A;  2LCE A;  1TF3 A;  1HR0 E;  2EPX A;  2DB2 A;  5A69 A;  4R2R A;  2EMZ A;  1F2I G;  1A1H A;  3C4T A;  1HNZ E;  1BBG A;  3LML A;  4GZN C;  1WRJ A;  5AE1 A;  3HXL A;  1EH7 A;  2EQ1 A;  4DV1 E;  2EM0 A;  1YSA C;  2E5L E;  4WXC A;  4JYA E;  5KL5 A;  3P1X A;  2LUQ A;  4DV3 E;  2MC6 A;  3TQM A;  2EOZ A;  2EL6 A;  1A1J A;  2ADR A;  4F2J C;  2HGH A;  4B3R E;  3T1H E;  2YTD A;  2EN3 A;  2YSP A;  2V8Q B;  5KL4 A;  1PJS A;  1RMD A;  4B3M E;  3AUZ A;  2CPN A;  5CFF E;  3FIG A;  2WBS A;  4JI8 E;  4GKK E;  5KL7 A;  5AC4 A;  1GZ6 A;  2EM7 A;  2EQ0 A;  2EML A;  2RTX A;  3DJW A;  2M4I A;  4O4K A;  1X6H A;  4N4R B;  1NCS A;  2ELY A;  1TF6 A;  2EM5 A;  4WPY A;  2ENH A;  4NXN E;  4BBY A;  4MLQ A;  2NAB A;  2YPN A;  3L00 A;  2EM3 A;  2EOE A;  2JP9 A;  4LFB E;  2MKD A;  3ADJ A;  2RPC A;  3BGH A;  4LF6 E;  2EPL X;  1P47 A;  2UU9 E;  4WFT A;  2WCC 3;  2E72 A;  1GQE A;  4M30 A;  2EOM A;  3C6M A;  1JK1 A;  2EOF A;  5AE2 A;  4O24 A;  1SFE A;  4OOG C;  2MC5 A;  1FJG E;  1T4N A;  1ZR9 A;  2LE2 A;  2EMA A;  4JI6 E;  2JY9 A;  2EM2 A;  1YZ9 A;  2UUA E;  2ZM6 E;  2EPP A;  1N36 E;  2J7J A;  1TN9 A;  1GTK A;  2YZT A;  2UUC E;  2YTQ A;  2PRT A;  2E1M A;  4DR2 E;  2H36 X;  2GHF A;  1AH5 A;  4RHB B;  2LJU A;  4K0K E;  2EMX A;  4JI2 E;  2R76 A;  1PKP A;  1L4S A;  2JOX A;  1T4L B;  4X66 E;  2K7I A;  2RQL A;  2EPO A;  5LL6 R;  4M0V A;  2N8X A;  4BCA A;  3EQ1 A;  3KZZ A;  4IS1 C;  4YHH E;  3RMP A;  2EL4 A;  2L2K B;  4KHP E;  3THO B;  1PDA A;  1X47 A;  2MDG A;  3H09 A;  1YYW A;  2DLQ A;  5F3W A;  2CSH A;  4DKK A;  1BBO A;  1STU A;  5IWA E;  2L92 A;  2EN6 A;  4GEQ B;  1RQ0 A;  3VK6 A;  1EH6 A;  3VYY A;  4FK5 C;  4DV0 E;  2EOY A;  5ADZ A;  4BMJ A;  2EOJ A;  4DUY E;  2NUF A;  1PJQ A;  4NHR A;  2JR1 A;  2V85 A;  2EN7 A;  2YRH A;  4LF4 E;  3LLH A;  2EM6 A;  2VQE E;  2YU5 A;  4X8W A;  3EPK A;  2B7V A;  3ADI A;  2EPU A;  2EQ3 A;  2EMY A;  2NA2 A;  2JPA A;  3QG5 C;  1ZU1 A;  1ZBT A;  1N3G A;  4LF9 E;  2A25 A;  4R2D A;  2WBU A;  1SR9 A;  4DR1 E;  2DMY A;  2YSO A;  1DGC A;  4JV5 E;  2EZ6 A;  4O43 A;  3HTX A;  2I13 A;  2NUE A;  2EPC A;  2EMC A;  1N32 E;  2LMZ A;  2HC5 A;  5BR8 E;  1YUI A;  2ENA A;  1A1F A;  3EPL A;  4R2P A;  3EPJ A;  1MGT A;  5A6J A;  2EMH A;  2UXC E;  4P78 A;  5KL3 A;  5LLQ A;  3THN A;  4DV2 E;  4BHC A;  5IXM B;  4M9V C;  2LRS A;  4ZYD A;  5A2Q C;  2EP3 A;  1A1K A;  3ADG A;  1X48 A;  2EOR A;  3KZY A;  2YWQ A;  3MSW A;  4YY3 E;  4DMI A;  4I8O A;  2EPN A;  4L8N A;  1KYQ A;  3OTO E;  5LMN E;  1UIL A;  2UXD E;  3ADL A;  1JK2 A;  1BB8 A;  1XMQ E;  2DGC A;  3JAM C;  4HTG A;  3BBG A;  2YTJ A;  4LF5 E; 
#chains in the Genus database with same CATH homology
 3BID A;  2K7I A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3BIDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations