The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
27
|
sequence length |
95
|
structure length |
95
|
Chain Sequence |
SLTDSKVKNAKSLEKEYKLTDGFGMHLLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLAAGIDPSAKKQADNKTIQEKR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structures of the arm-type binding domains of HPI and HAI7 integrases
pubmed doi rcsb |
| molecule tags |
Dna binding protein
|
| source organism |
Pectobacterium atrosepticum
|
| molecule keywords |
Phage integrase
|
| total genus |
27
|
| structure length |
95
|
| sequence length |
95
|
| ec nomenclature | |
| pdb deposition date | 2009-09-14 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF13356 | Arm-DNA-bind_3 | Arm DNA-binding domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Double Stranded RNA Binding Domain |
#chains in the Genus database with same CATH superfamily 3JU0 A; 3RMP A; 3JTZ A; #chains in the Genus database with same CATH topology 4O24 A; 3JAM C; 2JPA A; 2LO3 A; 2NUF A; 4BHC A; 4WPY A; 2R1F A; 5F3W A; 1X6F A; 5LMU E; 3T1Y E; 2NAB A; 1GZ6 A; 3EPJ A; 4GKJ E; 4DV7 E; 1A1G A; 3VHT B; 4R2A A; 1JK1 A; 2EM3 A; 1UN6 B; 2EOR A; 4F6M A; 2JR1 A; 3VYY A; 2DMY A; 1TN9 A; 1IQO A; 2N8X A; 2RS7 A; 3HXL A; 2L2M A; 4F9B B; 1BB8 A; 2EMW A; 3EQ1 A; 2EM4 A; 2M9A A; 4GEQ B; 4IS1 C; 5KL5 A; 3JTZ A; 4L5N C; 4M30 A; 1WXR A; 4LF4 E; 2EQ1 A; 4LTY A; 1X6H A; 2LCE A; 4M2Z A; 2EM8 A; 3VK6 A; 4X65 E; 1EKZ A; 1EH6 A; 2EMC A; 1BBG A; 4P78 A; 2JWO A; 2A25 A; 2EL4 A; 2EPP A; 2EN2 A; 4ZYE A; 2G7H A; 3AV0 A; 2D9H A; 4J8Z A; 5AC4 A; 1NEI A; 2B7V A; 2M7Q A; 4X9J A; 4WX9 A; 2L33 A; 2EJ4 A; 4AQY E; 2VE7 C; 2DB2 A; 3IWC A; 1N36 E; 3HQ1 A; 2UXB E; 2EM2 A; 1WHQ A; 5ADZ A; 4B3S E; 2EOJ A; 4B3T E; 5DNY A; 2V87 A; 1YYK A; 2UXD E; 4O43 A; 2YWQ A; 4O5G A; 2V89 A; 4R2C A; 3JU0 A; 1ZR9 A; 1TF6 A; 4BC7 A; 2EN4 A; 2EML A; 2N3H A; 3ECR A; 1HNX E; 2UXC E; 2EPK X; 1YPN A; 2EMB A; 1I94 E; 3EPH A; 3THO B; 1G2F C; 1ZBQ A; 3ADJ A; 1IMU A; 2HGH A; 4DR2 E; 2GPI A; 1Z1B A; 3TQM A; 4DV2 E; 1IBK E; 4WSP A; 2L2K B; 2JYA A; 2WBS A; 2V8Q B; 2YU8 A; 2M1S A; 2BBG A; 3C4B A; 1T39 A; 4DV3 E; 2NA2 A; 1IQS A; 2EZ6 A; 2EPC A; 2K4V A; 1EH8 A; 2ODR C; 4DR7 E; 2EMF A; 2LTS A; 1WJP A; 4F9A B; 3AUZ A; 2WCC 3; 2WZO A; 1N32 E; 1SFE A; 1N33 E; 4K0K E; 4ZYD A; 1PKP A; 1P47 A; 2LVH A; 2GLI A; 2YTD A; 1FKA E; 2EOO A; 3J7Y p; 2HJJ A; 4JI7 E; 3HPZ A; 2MC6 A; 1YFH A; 4BC9 A; 4DR4 E; 2EPX A; 4M9V C; 5AC5 A; 2LMZ A; 4RHB B; 2UUB E; 2MDG A; 2EM9 A; 2RSM A; 4X64 E; 2ENA A; 1T4N A; 1X48 A; 4R2D A; 4NZV A; 1XMO E; 3J80 C; 1QU6 A; 1T38 A; 4X62 E; 5KL2 A; 1DI2 A; 4TUI A; 1DGC A; 2EQ3 A; 1TF3 A; 1XNR E; 2EOM A; 1YUI A; 3J81 C; 2YTG A; 3KWR A; 2L8T A; 2V83 A; 3LLH A; 2HHH E; 2WBU A; 5AE2 A; 4JI4 E; 4DV4 E; 1N3G A; 2EOH A; 3F6H A; 3T1H E; 2EOX A; 5A6K A; 2EOE A; 1ZAA C; 2ADR A; 2E5L E; 3MHS C; 4BBY A; 3DF6 A; 4FK5 C; 1UHZ A; 2EOF A; 4JI1 E; 4KWY A; 2LBS B; 5FLX C; 1SR9 A; 2EMH A; 5TSE A; 2EPZ A; 3M99 B; 2EMZ A; 4DV0 E; 1RMD A; 2YTP A; 2YRH A; 2DLQ A; 3DJW A; 1MGT A; 4IJD A; 1IBL E; 4B3R E; 2JXP A; 3H09 A; 2UU9 E; 4LFA E; 2RS6 A; 1G2D C; 2GHF A; 1NCS A; 2LT7 A; 2DIX A; 3HTX A; 4R03 A; 2EOQ A; 4B3M E; 2JOB A; 3MSW A; 2EM6 A; 4LFB E; 2YRM A; 2RQL A; 3OTO E; 2EPR A; 1QNT A; 2B9D A; 5A69 A; 2DLK A; 5T6J A; 2YTQ A; 4DMI A; 2V86 A; 4BCA A; 1UBD C; 2E72 A; 2L2N A; 2EPA A; 1A1J A; 2NUE A; 4R2R A; 2LJH A; 2EMK A; 2RTX A; 1J26 A; 2LV2 A; 3UK3 C; 4WXC A; 1GQE A; 2EMI A; 5AE1 A; 1YYW A; 2LTR A; 1IBM E; 2ZM6 E; 4LF6 E; 2N3G A; 3OML A; 4NXM E; 2ODR D; 2VRD A; 2UUA E; 4JI3 E; 1XMQ E; 5A2Q C; 4LF7 E; 2ENC A; 2EP3 A; 2R76 A; 2DRP A; 2FGG A; 4L8N A; 1GTK A; 1N34 E; 1XNQ E; 3BGH A; 1O0W A; 4WSG A; 4DR6 E; 2F4V E; 2ELY A; 2YRK A; 1HNW E; 2CSH A; 2LUQ A; 4BMJ A; 5KL6 A; 1HR0 E; 1KJK A; 4BS9 A; 3P1X A; 2EL5 A; 2EM7 A; 4KZS A; 3EPL A; 2EL6 A; 2EWL A; 2Q8U A; 3HPS A; 1A1F A; 2PRT A; 2KOU A; 1L4S A; 2CT1 A; 1F2I G; 1KYQ A; 3LML A; 2I13 A; 1B69 A; 2EMG A; 4R2S A; 4JI6 E; 1BBO A; 3THN A; 4TUG A; 2V88 A; 2EOZ A; 5A6J A; 2FV4 B; 2EPN A; 1A1I A; 1YYO A; 4JYA E; 4OX9 E; 1X3C A; 2L92 A; 2V85 A; 4RH8 A; 2JP9 A; 4F9C B; 5LL6 R; 4LU9 A; 2LUP B; 5IWA E; 2ELZ A; 2YTE A; 2VQF E; 4WYQ B; 2YSO A; 2L3J A; 2MKN A; 2BB8 A; 3BBG A; 2EN8 A; 1JK2 A; 2WBT A; 4O4K A; 2EMX A; 3C6K A; 4WFT A; 1PJS A; 1UIL A; 4M0V A; 2L3C A; 1X49 A; 4MLQ A; 2CTD A; 4DR1 E; 1X5W A; 3IWD A; 2EMY A; 2YTF A; 2UUC E; 2MDR A; 3BID A; 3RMP A; 2J7J A; 5IV8 B; 5AE3 A; 2F8B A; 4ZYH A; 1YUJ A; 2DSY A; 1PJT A; 4P7D A; 3BF2 A; 1WHN A; 5CFF E; 4F6N A; 2KHX A; 4R8O A; 2CPN A; 5BR8 E; 1WRJ A; 4DKK A; 3VYX A; 1PDA A; 2EM5 A; 2YTJ A; 1AAY A; 1A1H A; 2EOS A; 2EOY A; 2E1M A; 2EN7 A; 2EMA A; 2M4I A; 3K6Q A; 3MHH C; 2NUG A; 2YTI A; 2EE8 A; 1LLM C; 2K7I A; 3L00 A; 2JY9 A; 2B3T B; 1YSA C; 2EM0 A; 5AAS A; 2RSI A; 5A6B D; 2VQE E; 2YSP A; 3ZOQ B; 4KHP E; 4YY3 E; 5KL3 A; 3ADL A; 3C4T A; 5A6A A; 2MC5 A; 4LF5 E; 1STU A; 2JOX A; 2EPO A; 4R2P A; 4JI8 E; 3J7A G; 2RPC A; 3QG5 C; 4Q35 B; 5IT9 C; 4DV5 E; 3IWB A; 2LE2 A; 2I9I A; 2YPN A; 3KZY A; 4DV6 E; 4GZN C; 1ZU1 A; 1DQ3 A; 1YZ9 A; 4JI0 E; 2EOI A; 4GKK E; 5LLQ A; 4F2J C; 2YZT A; 1MEY C; 3FIG A; 5A6B A; 2EPU A; 1EH7 A; 4N4R B; 4OOG C; 4BHB A; 4DR3 E; 4LF8 E; 3C6M A; 1AH5 A; 5LMN E; 1RQ0 A; 3EPK A; 1A1L A; 2B7T A; 2LRS A; 2KON A; 4F54 A; 4WXD A; 2YU5 A; 1T4O A; 2DMI A; 4JV5 E; 1PJQ A; 1ZBT A; 4R2Q A; 4LF9 E; 4HTG A; 4Q28 A; 5KL7 A; 1J5E E; 1HNZ E; 4ZYG A; 2EN6 A; 4MLV A; 1X6E A; 3F6G A; 2L6M A; 2EPM X; 3KZZ A; 4DUY E; 4X8W A; 2H36 X; 2EN3 A; 2JVA A; 1T4L B; 4JI5 E; 2YTN A; 3ADG A; 2IHR 1; 4DUZ E; 2YTO A; 2VF1 A; 4R2E A; 4DV1 E; 2ENH A; 4HEI A; 5KL4 A; 2DGC A; 2EPL X; 2EN1 A; 2LJU A; 1RC7 A; 2EQ0 A; 1FJG E; 4DR5 E; 2FTX B; 2HC5 A; 5IXM B; 4LFC E; 4JI2 E; 1X47 A; 4YHH E; 1A1K A; 3ADI A; 4NXN E; 2YT4 A; 4X66 E; 4NHR A; 2MKD A; 4I8O A; #chains in the Genus database with same CATH homology 3VYX A; 4DR7 E; 3JAM C; 1GQE A; 2NUF A; 2LTS A; 5AE1 A; 1YYW A; 2LTR A; 4WPY A; 4F9A B; 1IBM E; 2E1M A; 2M4I A; 3AUZ A; 3K6Q A; 2WZO A; 2ZM6 E; 5F3W A; 4LF6 E; 1N32 E; 2NUG A; 1N33 E; 4K0K E; 5LMU E; 2N3G A; 3T1Y E; 1GZ6 A; 3OML A; 1PKP A; 4NXM E; 2ODR D; 4GKJ E; 4DV7 E; 2UUA E; 2JY9 A; 1FKA E; 2B3T B; 3J7Y p; 4JI7 E; 3HPZ A; 4JI3 E; 2MC6 A; 5A2Q C; 1XMQ E; 4LF7 E; 4BC9 A; 5AAS A; 4DR4 E; 2VQE E; 2LMZ A; 2UUB E; 2FGG A; 2JR1 A; 3VYY A; 2DMY A; 4L8N A; 3ZOQ B; 2RSM A; 4KHP E; 4X64 E; 1N34 E; 1XNQ E; 1T4N A; 1X48 A; 2RS7 A; 1XMO E; 4YY3 E; 1O0W A; 1QU6 A; 3J80 C; 3ADL A; 4DR6 E; 3HXL A; 2L2M A; 4F9B B; 4X62 E; 2F4V E; 3C4T A; 1HNW E; 1DI2 A; 4TUI A; 2MC5 A; 4LF5 E; 4GEQ B; 1STU A; 2LUQ A; 2JOX A; 3JTZ A; 4BMJ A; 4L5N C; 1XNR E; 4M30 A; 1WXR A; 4LF4 E; 1HR0 E; 4LTY A; 3J81 C; 4BS9 A; 3P1X A; 3KWR A; 4KZS A; 4M2Z A; 2L8T A; 2V83 A; 3LLH A; 4JI8 E; 2EWL A; 3HPS A; 3J7A G; 3VK6 A; 2HHH E; 4X65 E; 1EKZ A; 5AE2 A; 4JI4 E; 5IT9 C; 4DV5 E; 2KOU A; 2LE2 A; 3IWB A; 4DV4 E; 4P78 A; 3F6H A; 4DV6 E; 2JWO A; 3T1H E; 2G7H A; 3AV0 A; 1DQ3 A; 1YZ9 A; 4JI0 E; 3LML A; 4GKK E; 4J8Z A; 2YZT A; 4I8O A; 4JI6 E; 3FIG A; 4TUG A; 2E5L E; 2V88 A; 2FV4 B; 2B7V A; 2M7Q A; 4BBY A; 1YYO A; 4JYA E; 4OOG C; 3DF6 A; 2L33 A; 4OX9 E; 1UHZ A; 4JI1 E; 4DR3 E; 2L92 A; 4AQY E; 2V85 A; 2VE7 C; 4LF8 E; 2DB2 A; 3IWC A; 5LMN E; 4F9C B; 3HQ1 A; 1N36 E; 2LBS B; 5LL6 R; 4LU9 A; 2UXB E; 5FLX C; 1RQ0 A; 2LUP B; 5IWA E; 1SR9 A; 1WHQ A; 5ADZ A; 2VQF E; 4B3S E; 2B7T A; 2LRS A; 4WYQ B; 5DNY A; 2L3J A; 4DV0 E; 4B3T E; 2KON A; 4F54 A; 2V87 A; 1YYK A; 2UXD E; 1T4O A; 3DJW A; 4JV5 E; 2V89 A; 1IBL E; 4WFT A; 1ZBT A; 3JU0 A; 4B3R E; 4LF9 E; 4Q28 A; 3H09 A; 4BC7 A; 1UIL A; 2UU9 E; 4M0V A; 1J5E E; 1HNZ E; 4LFA E; 2RS6 A; 2L3C A; 1X49 A; 2N3H A; 3F6G A; 4DR1 E; 1HNX E; 2L6M A; 2UXC E; 4DUY E; 2DIX A; 4X8W A; 4R03 A; 2H36 X; 3HTX A; 1I94 E; 3IWD A; 2JVA A; 1T4L B; 2UUC E; 2MDR A; 4B3M E; 4JI5 E; 2JOB A; 1ZBQ A; 3ADG A; 3ADJ A; 3MSW A; 2IHR 1; 4DUZ E; 3RMP A; 2VF1 A; 4DR2 E; 5AE3 A; 4DV1 E; 2F8B A; 4DV2 E; 1IBK E; 4LFB E; 3OTO E; 4WSP A; 2L2K B; 2B9D A; 2DSY A; 2V8Q B; 1RC7 A; 2M1S A; 4P7D A; 1FJG E; 1WHN A; 2FTX B; 3C4B A; 5T6J A; 5CFF E; 4DR5 E; 4DV3 E; 4LFC E; 4JI2 E; 4DMI A; 1X47 A; 2V86 A; 4BCA A; 2NA2 A; 2KHX A; 4YHH E; 2EZ6 A; 4R8O A; 2L2N A; 4NXN E; 2YT4 A; 3ADI A; 2CPN A; 5BR8 E; 4X66 E; 2NUE A; 2LJH A; 4DKK A; 2K4V A; 2RTX A; 1J26 A; 2ODR C;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
