4HEIA

2a x-ray structure of hpf from vibrio cholerae
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
92
structure length
92
Chain Sequence
MQINIQGHHIDLTDSMQDYVHSKFDKLERFFDHINHVQVILRVEKLRQIAEATLHVNQAEIHAHADDENMYAAIDSLVDKLVRQLNKHKEKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of Vibrio cholerae ribosome hibernation promoting factor.
pubmed doi rcsb
molecule tags Translation
molecule keywords RIBOSOME HIBERNATION PROTEIN YHBH
total genus 28
structure length 92
sequence length 92
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.100 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Ribosome hibernation promotion factor-like 4heiA00
2RQLA 4HEIA 1IMUA 1L4SA 2YWQA 3TQMA 1N3GA
chains in the Genus database with same CATH superfamily
1XNQE 4RHBB 1NCSA 2EOMA 4R8OA 1G2DC 4JI3E 1PJTA 1KYQA 4WFTA 1FJGE 1EH6A 2EM6A 2NUFA 2EPMX 3VHTB 4DR1E 2JR1A 1GQEA 1IQOA 2LTRA 3OMLA 1NEIA 2I13A 4LF5E 4IS1C 1N3GA 1G2FC 1Z1BA 2VQFE 2MDGA 2EOJA 2WBUA 1BBGA 2EM5A 2LO3A 2L33A 5KL3A 1X49A 3OTOE 2FV4B 2ELYA 1P47A 2EOSA 3JU0A 5KL4A 4DMIA 2EQ1A 2EN7A 3DJWA 1X6HA 2EM2A 1X48A 1BB8A 5LMUE 3ADGA 1N32E 2RSMA 4JI0E 4NZVA 3QG5C 2EMLA 2MC5A 1T4NA 2EMIA 1O0WA 3J7Yp 3EPHA 2B9DA 2L3JA 2M1SA 4TUIA 5A69A 2EMFA 2YTPA 3THNA 2EMYA 2ENCA 2ODRC 5IWAE 4BCAA 2EL6A 1HR0E 1UILA 1WHNA 3K6QA 1ZR9A 2LJUA 2DMIA 1DGCA 2YZTA 4LTYA 4R2DA 2DRPA 2HC5A 4GZNC 2DIXA 2WBTA 2ZM6E 2JOXA 3MSWA 4ZYHA 4KHPE 4F9BB 4GKJE 4I8OA 4FK5C 5A2QC 5AC4A 2EOQA 2YSOA 2NUEA 4LFBE 2HHHE 2EOOA 4R2PA 5A6BD 4X8WA 2DMYA 4DR5E 2MKNA 1L4SA 1ZAAC 3BBGA 1YUIA 2EPKX 2LJHA 1WHQA 4JI8E 5A6BA 2JPAA 2EM9A 2JY9A 2I9IA 4DV1E 1UN6B 2V87A 2EPUA 1EKZA 4O24A 5F3WA 2EM7A 5A6JA 2EM8A 5A6AA 3MHHC 2LBSB 2YTEA 2EZ6A 4Q28A 2JXPA 4R2EA 2ELZA 2LCEA 1ZU1A 5ADZA 5T6JA 2UUAE 2E1MA 3AV0A 5KL6A 2YTDA 2YRMA 4M30A 5LMNE 3HPSA 4DKKA 2A25A 2EMAA 2DB2A 4B3TE 1YZ9A 2HJJA 5KL2A 2M4IA 2UU9E 2RPCA 1JK1A 3C4TA 4LFCE 2EPZA 1T4OA 3IWDA 4O43A 3C6KA 1T4LB 1UBDC 2VF1A 1IBME 3LMLA 4DR7E 1PKPA 4LF6E 3HQ1A 3EPJA 2EMWA 1TF6A 3J7AG 2LTSA 4LU9A 4JI4E 1N34E 2R76A 4F6MA 2YTGA 4KZSA 2EQ3A 4GEQB 2EOZA 3H09A 4MLQA 1GTKA 3IWCA 3EPKA 2L2NA 2V8QB 4ZYDA 5FLXC 3ADJA 1A1HA 2NUGA 4GKKE 2EM3A 3THOB 1IBKE 4NHRA 1X6EA 4R2RA 2YSPA 4F9CB 4KWYA 1FKAE 2EP3A 2LUQA 2L2MA 2LRSA 1WJPA 4M0VA 5AASA 2RSIA 3LLHA 1IMUA 1YFHA 3AUZA 3T1YE 2UUBE 2KHXA 3BF2A 2EOIA 5LL6R 5KL7A 3HPZA 1J5EE 2DGCA 4R2CA 2EPPA 1A1GA 5IV8B 3EPLA 4DUYE 2UXBE 3JAMC 1TN9A 3TQMA 2NABA 2YT4A 2EPNA 2EQ0A 4JV5E 1MEYC 4X66E 2L6MA 1EH7A 4X65E 1I94E 2EOYA 4BHCA 4YHHE 2WCC3 1A1JA 2ENAA 2EOEA 4X64E 1SFEA 2EOFA 2F8BA 3JTZA 4O4KA 1J26A 2UXDE 4DV4E 1X5WA 1F2IG 4WX9A 1A1KA 2EJ4A 4F2JC 4B3ME 2JWOA 2RS6A 2L3CA 1BBOA 1YYOA 2V83A 4YY3E 1RQ0A 4DV7E 3ECRA 3RMPA 2EN6A 2EM0A 2YRHA 4DV2E 1LLMC 4LF7E 2JVAA 4DV6E 2BB8A 4WXDA 2N8XA 2EL5A 1RMDA 2CSHA 2L2KB 2EPAA 2H36X 2EPOA 2EWLA 4JI6E 2EMKA 2RS7A 2LT7A 3ADLA 2M9AA 3J80C 4F54A 1GZ6A 3BIDA 4JI2E 2EMCA 2E5LE 4M9VC 3P1XA 1YUJA 2V88A 2RQLA 2K4VA 2V86A 5AC5A 4F9AB 2WBSA 1T39A 2YPNA 4BS9A 5TSEA 2EMBA 4MLVA 4O5GA 3EQ1A 3UK3C 2BBGA 2EMXA 1HNXE 1QU6A 2R1FA 2GHFA 4NXNE 2V85A 1ZBQA 2YTOA 1WXRA 2EMGA 2EPRA 2YTFA 2ENHA 1PJQA 4DV5E 2PRTA 2HGHA 2EN3A 4WXCA 2UXCE 4R03A 4JI7E 2FTXB 5AE3A 1DI2A 3FIGA 2EN2A 4TUGA 2JYAA 2N3GA 3HTXA 2YU5A 2KOUA 4L8NA 4HEIA 2V89A 4WSGA 4B3RE 1RC7A 2MKDA 2VRDA 1X6FA 5AE2A 1STUA 2NA2A 2EE8A 2ODRD 4JI5E 4M2ZA 3J81C 3M99B 5LLQA 1ZBTA 2L8TA 2GPIA 2JP9A 2B7TA 2B7VA 2YU8A 4R2AA 2D9HA 2CT1A 4DR6E 2EN4A 4WYQB 2Q8UA 2EPXA 4L5NC 2B3TB 2YTJA 2EN1A 2CTDA 4LF4E 1AH5A 2EPCA 4WSPA 2EM4A 5DNYA 1PJSA 2KONA 1JK2A 3DF6A 1QNTA 3VYYA 2LMZA 4JYAE 5AE1A 1AAYA 3ADIA 1HNZE 2YTNA 5KL5A 3MHSC 1IQSA 3F6GA 2MDRA 3HXLA 2GLIA 3KZZA 1IBLE 2G7HA 4DR2E 3ZOQB 4ZYGA 2YTIA 3KZYA 2N3HA 2J7JA 2EMHA 4DUZE 4R2QA 1KJKA 4F6NA 2LV2A 2EN8A 3VK6A 2DLQA 1A1FA 2VE7C 4K0KE 3IWBA 4P7DA 1WRJA 4B3SE 1YPNA 5BR8E 4NXME 1TF3A 1XMOE 3C4BA 4DR3E 2EOHA 2E72A 1B69A 4DR4E 4BC9A 4OOGC 2LUPB 2IHR1 4BMJA 5IXMB 2ADRA 4OX9E 4P78A 2K7IA 1A1IA 2FGGA 4IJDA 2CPNA 4LFAE 4X62E 5IT9C 3F6HA 2UUCE 2LVHA 2MC6A 1PDAA 2L92A 2YRKA 5CFFE 1YYKA 4BBYA 5A6KA 2VQEE 4N4RB 4X9JA 1HNWE 2EOXA 3L00A 2LE2A 2WZOA 1YSAC 4WPYA 4JI1E 3BGHA 1T38A 4Q35B 1DQ3A 4HTGA 1A1LA 2EMZA 2EPLX 2RTXA 1YYWA 4LF9E 1SR9A 1N33E 2YWQA 1XMQE 4DV0E 3C6MA 3KWRA 4BC7A 4DV3E 2M7QA 4R2SA 2YTQA 3T1HE 1X3CA 3VYXA 2DLKA 4J8ZA 4RH8A 1UHZA 4LF8E 4AQYE 2F4VE 1XNRE 2EORA 2JOBA 2EL4A 1EH8A 1X47A 1N36E 1MGTA 4ZYEA 4BHBA 2DSYA
chains in the Genus database with same CATH topology
2RQLA 4HEIA 1IMUA 1L4SA 2YWQA 3TQMA 1N3GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RQL A;  4HEI A;  1IMU A;  1L4S A;  2YWQ A;  3TQM A;  1N3G A; 
#chains in the Genus database with same CATH topology
 1XNQ E;  4RHB B;  1NCS A;  2EOM A;  4R8O A;  1G2D C;  4JI3 E;  1PJT A;  1KYQ A;  4WFT A;  1FJG E;  1EH6 A;  2EM6 A;  2NUF A;  2EPM X;  3VHT B;  4DR1 E;  2JR1 A;  1GQE A;  1IQO A;  2LTR A;  3OML A;  1NEI A;  2I13 A;  4LF5 E;  4IS1 C;  1N3G A;  1G2F C;  1Z1B A;  2VQF E;  2MDG A;  2EOJ A;  2WBU A;  1BBG A;  2EM5 A;  2LO3 A;  2L33 A;  5KL3 A;  1X49 A;  3OTO E;  2FV4 B;  2ELY A;  1P47 A;  2EOS A;  3JU0 A;  5KL4 A;  4DMI A;  2EQ1 A;  2EN7 A;  3DJW A;  1X6H A;  2EM2 A;  1X48 A;  1BB8 A;  5LMU E;  3ADG A;  1N32 E;  2RSM A;  4JI0 E;  4NZV A;  3QG5 C;  2EML A;  2MC5 A;  1T4N A;  2EMI A;  1O0W A;  3J7Y p;  3EPH A;  2B9D A;  2L3J A;  2M1S A;  4TUI A;  5A69 A;  2EMF A;  2YTP A;  3THN A;  2EMY A;  2ENC A;  2ODR C;  5IWA E;  4BCA A;  2EL6 A;  1HR0 E;  1UIL A;  1WHN A;  3K6Q A;  1ZR9 A;  2LJU A;  2DMI A;  1DGC A;  2YZT A;  4LTY A;  4R2D A;  2DRP A;  2HC5 A;  4GZN C;  2DIX A;  2WBT A;  2ZM6 E;  2JOX A;  3MSW A;  4ZYH A;  4KHP E;  4F9B B;  4GKJ E;  4I8O A;  4FK5 C;  5A2Q C;  5AC4 A;  2EOQ A;  2YSO A;  2NUE A;  4LFB E;  2HHH E;  2EOO A;  4R2P A;  5A6B D;  4X8W A;  2DMY A;  4DR5 E;  2MKN A;  1L4S A;  1ZAA C;  3BBG A;  1YUI A;  2EPK X;  2LJH A;  1WHQ A;  4JI8 E;  5A6B A;  2JPA A;  2EM9 A;  2JY9 A;  2I9I A;  4DV1 E;  1UN6 B;  2V87 A;  2EPU A;  1EKZ A;  4O24 A;  5F3W A;  2EM7 A;  5A6J A;  2EM8 A;  5A6A A;  3MHH C;  2LBS B;  2YTE A;  2EZ6 A;  4Q28 A;  2JXP A;  4R2E A;  2ELZ A;  2LCE A;  1ZU1 A;  5ADZ A;  5T6J A;  2UUA E;  2E1M A;  3AV0 A;  5KL6 A;  2YTD A;  2YRM A;  4M30 A;  5LMN E;  3HPS A;  4DKK A;  2A25 A;  2EMA A;  2DB2 A;  4B3T E;  1YZ9 A;  2HJJ A;  5KL2 A;  2M4I A;  2UU9 E;  2RPC A;  1JK1 A;  3C4T A;  4LFC E;  2EPZ A;  1T4O A;  3IWD A;  4O43 A;  3C6K A;  1T4L B;  1UBD C;  2VF1 A;  1IBM E;  3LML A;  4DR7 E;  1PKP A;  4LF6 E;  3HQ1 A;  3EPJ A;  2EMW A;  1TF6 A;  3J7A G;  2LTS A;  4LU9 A;  4JI4 E;  1N34 E;  2R76 A;  4F6M A;  2YTG A;  4KZS A;  2EQ3 A;  4GEQ B;  2EOZ A;  3H09 A;  4MLQ A;  1GTK A;  3IWC A;  3EPK A;  2L2N A;  2V8Q B;  4ZYD A;  5FLX C;  3ADJ A;  1A1H A;  2NUG A;  4GKK E;  2EM3 A;  3THO B;  1IBK E;  4NHR A;  1X6E A;  4R2R A;  2YSP A;  4F9C B;  4KWY A;  1FKA E;  2EP3 A;  2LUQ A;  2L2M A;  2LRS A;  1WJP A;  4M0V A;  5AAS A;  2RSI A;  3LLH A;  1IMU A;  1YFH A;  3AUZ A;  3T1Y E;  2UUB E;  2KHX A;  3BF2 A;  2EOI A;  5LL6 R;  5KL7 A;  3HPZ A;  1J5E E;  2DGC A;  4R2C A;  2EPP A;  1A1G A;  5IV8 B;  3EPL A;  4DUY E;  2UXB E;  3JAM C;  1TN9 A;  3TQM A;  2NAB A;  2YT4 A;  2EPN A;  2EQ0 A;  4JV5 E;  1MEY C;  4X66 E;  2L6M A;  1EH7 A;  4X65 E;  1I94 E;  2EOY A;  4BHC A;  4YHH E;  2WCC 3;  1A1J A;  2ENA A;  2EOE A;  4X64 E;  1SFE A;  2EOF A;  2F8B A;  3JTZ A;  4O4K A;  1J26 A;  2UXD E;  4DV4 E;  1X5W A;  1F2I G;  4WX9 A;  1A1K A;  2EJ4 A;  4F2J C;  4B3M E;  2JWO A;  2RS6 A;  2L3C A;  1BBO A;  1YYO A;  2V83 A;  4YY3 E;  1RQ0 A;  4DV7 E;  3ECR A;  3RMP A;  2EN6 A;  2EM0 A;  2YRH A;  4DV2 E;  1LLM C;  4LF7 E;  2JVA A;  4DV6 E;  2BB8 A;  4WXD A;  2N8X A;  2EL5 A;  1RMD A;  2CSH A;  2L2K B;  2EPA A;  2H36 X;  2EPO A;  2EWL A;  4JI6 E;  2EMK A;  2RS7 A;  2LT7 A;  3ADL A;  2M9A A;  3J80 C;  4F54 A;  1GZ6 A;  3BID A;  4JI2 E;  2EMC A;  2E5L E;  4M9V C;  3P1X A;  1YUJ A;  2V88 A;  2RQL A;  2K4V A;  2V86 A;  5AC5 A;  4F9A B;  2WBS A;  1T39 A;  2YPN A;  4BS9 A;  5TSE A;  2EMB A;  4MLV A;  4O5G A;  3EQ1 A;  3UK3 C;  2BBG A;  2EMX A;  1HNX E;  1QU6 A;  2R1F A;  2GHF A;  4NXN E;  2V85 A;  1ZBQ A;  2YTO A;  1WXR A;  2EMG A;  2EPR A;  2YTF A;  2ENH A;  1PJQ A;  4DV5 E;  2PRT A;  2HGH A;  2EN3 A;  4WXC A;  2UXC E;  4R03 A;  4JI7 E;  2FTX B;  5AE3 A;  1DI2 A;  3FIG A;  2EN2 A;  4TUG A;  2JYA A;  2N3G A;  3HTX A;  2YU5 A;  2KOU A;  4L8N A;  4HEI A;  2V89 A;  4WSG A;  4B3R E;  1RC7 A;  2MKD A;  2VRD A;  1X6F A;  5AE2 A;  1STU A;  2NA2 A;  2EE8 A;  2ODR D;  4JI5 E;  4M2Z A;  3J81 C;  3M99 B;  5LLQ A;  1ZBT A;  2L8T A;  2GPI A;  2JP9 A;  2B7T A;  2B7V A;  2YU8 A;  4R2A A;  2D9H A;  2CT1 A;  4DR6 E;  2EN4 A;  4WYQ B;  2Q8U A;  2EPX A;  4L5N C;  2B3T B;  2YTJ A;  2EN1 A;  2CTD A;  4LF4 E;  1AH5 A;  2EPC A;  4WSP A;  2EM4 A;  5DNY A;  1PJS A;  2KON A;  1JK2 A;  3DF6 A;  1QNT A;  3VYY A;  2LMZ A;  4JYA E;  5AE1 A;  1AAY A;  3ADI A;  1HNZ E;  2YTN A;  5KL5 A;  3MHS C;  1IQS A;  3F6G A;  2MDR A;  3HXL A;  2GLI A;  3KZZ A;  1IBL E;  2G7H A;  4DR2 E;  3ZOQ B;  4ZYG A;  2YTI A;  3KZY A;  2N3H A;  2J7J A;  2EMH A;  4DUZ E;  4R2Q A;  1KJK A;  4F6N A;  2LV2 A;  2EN8 A;  3VK6 A;  2DLQ A;  1A1F A;  2VE7 C;  4K0K E;  3IWB A;  4P7D A;  1WRJ A;  4B3S E;  1YPN A;  5BR8 E;  4NXM E;  1TF3 A;  1XMO E;  3C4B A;  4DR3 E;  2EOH A;  2E72 A;  1B69 A;  4DR4 E;  4BC9 A;  4OOG C;  2LUP B;  2IHR 1;  4BMJ A;  5IXM B;  2ADR A;  4OX9 E;  4P78 A;  2K7I A;  1A1I A;  2FGG A;  4IJD A;  2CPN A;  4LFA E;  4X62 E;  5IT9 C;  3F6H A;  2UUC E;  2LVH A;  2MC6 A;  1PDA A;  2L92 A;  2YRK A;  5CFF E;  1YYK A;  4BBY A;  5A6K A;  2VQE E;  4N4R B;  4X9J A;  1HNW E;  2EOX A;  3L00 A;  2LE2 A;  2WZO A;  1YSA C;  4WPY A;  4JI1 E;  3BGH A;  1T38 A;  4Q35 B;  1DQ3 A;  4HTG A;  1A1L A;  2EMZ A;  2EPL X;  2RTX A;  1YYW A;  4LF9 E;  1SR9 A;  1N33 E;  2YWQ A;  1XMQ E;  4DV0 E;  3C6M A;  3KWR A;  4BC7 A;  4DV3 E;  2M7Q A;  4R2S A;  2YTQ A;  3T1H E;  1X3C A;  3VYX A;  2DLK A;  4J8Z A;  4RH8 A;  1UHZ A;  4LF8 E;  4AQY E;  2F4V E;  1XNR E;  2EOR A;  2JOB A;  2EL4 A;  1EH8 A;  1X47 A;  1N36 E;  1MGT A;  4ZYE A;  4BHB A;  2DSY A; 
#chains in the Genus database with same CATH homology
 2RQL A;  4HEI A;  1IMU A;  1L4S A;  2YWQ A;  3TQM A;  1N3G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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