4RH8A

Crystal structure of the outer membrane lipopolysaccharide transport protein lpte (rlpb) from escherichia coli in the tetragonal crystal form
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
143
structure length
133
Chain Sequence
QVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISAKVFRSFFDEQDMIVKEMYDRAAEQLIRKLPSIRAADIRSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lipid binding protein
source organism Escherichia coli
publication title Structural basis of lipopolysaccharide insertion into the bacterial outer membrane
rcsb
molecule keywords LPS-assembly lipoprotein LptE
total genus 30
structure length 133
sequence length 143
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04390 LptE Lipopolysaccharide-assembly
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.150 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Lipoprotein like domain 4rh8A00
2N8XA 4RHBB 3BF2A 4KWYA 5IXMB 2R76A 2JXPA 4NHRA 4Q35B 5IV8B 4RH8A 5TSEA 4N4RB
chains in the Genus database with same CATH superfamily
3DF6A 4F6MA 4NXME 1YUJA 5TSEA 1JK1A 3OTOE 2GPIA 1ZAAC 3JTZA 4DUYE 1WJPA 2UU9E 2EPNA 2DRPA 4ZYHA 1LLMC 2UXBE 4DR3E 2WCC3 4M30A 4X65E 5T6JA 4X66E 2V85A 1GZ6A 2UUBE 2YTFA 2JR1A 4HTGA 4DV0E 1PDAA 3H09A 2FGGA 1PJSA 1AH5A 3THOB 3DJWA 3HPSA 3VHTB 4X9JA 3ADLA 1PKPA 2MDRA 4WXDA 3BGHA 2LUPB 2DB2A 2UXCE 1YPNA 4DV6E 3T1HE 4BBYA 1FKAE 2DLKA 2WZOA 4DV2E 2CTDA 2VQEE 2EL4A 1ZU1A 4RHBB 5IXMB 4LF4E 1YYWA 2K4VA 1T4NA 4DV4E 4BHBA 3THNA 2M7QA 1FJGE 3JAMC 3TQMA 3T1YE 4B3TE 1G2DC 2EQ1A 1N3GA 2VRDA 1T38A 1TN9A 4F9BB 1GQEA 2LCEA 2L3CA 2EM7A 4JI4E 3IWDA 2MKNA 5A69A 1JK2A 5IT9C 2UUCE 2B7TA 1UN6B 2L3JA 1AAYA 1X48A 2ADRA 2EJ4A 2YZTA 3HTXA 4YHHE 4F9CB 3IWCA 3J81C 2HGHA 4BC7A 2HC5A 2EOHA 4LTYA 4JI6E 4R2QA 2YTDA 1HR0E 2L2NA 1N33E 2DGCA 3MHHC 2EN4A 2L8TA 2D9HA 4R2SA 2YU8A 1PJQA 2V89A 2EOSA 4M2ZA 3KZZA 1Z1BA 2F8BA 1MGTA 2EOJA 4DUZE 4WYQB 2EOFA 2EQ3A 3F6HA 4NZVA 5KL2A 2JOXA 4R2RA 4WX9A 2LBSB 3AV0A 2DLQA 4LF9E 4B3RE 4F2JC 4F9AB 4LF7E 2YRMA 2B9DA 5LMNE 4Q28A 1IBME 4YY3E 2EP3A 2MKDA 2EM0A 3JU0A 5AC5A 4LFCE 4BC9A 5AE3A 4DR6E 2ODRC 4R2CA 3ZOQB 2NUGA 2YTQA 1YSAC 2ODRD 2VF1A 1XNRE 2KONA 1BBGA 2FV4B 1X49A 1WHNA 2CSHA 2EZ6A 2LUQA 4BS9A 3RMPA 2DSYA 2KOUA 4P7DA 4B3ME 5AC4A 4GEQB 2YTGA 4JI0E 1A1KA 2NA2A 2WBSA 2JY9A 2MC6A 2EPMX 2EPLX 2L33A 2EL6A 2EPZA 2LMZA 2F4VE 2EPRA 1GTKA 4R2PA 2N8XA 4M0VA 4R2DA 1A1GA 2EPAA 1B69A 3BBGA 5FLXC 3HXLA 2R1FA 2EOOA 1RQ0A 1A1JA 1A1IA 2H36X 4BHCA 4NHRA 2GHFA 4DR5E 4GZNC 2EN1A 1QU6A 4MLQA 1G2FC 2LTSA 2JXPA 4O5GA 4TUIA 2ENAA 3BIDA 3ADIA 2EE8A 2LJHA 1IMUA 2EMZA 2EM4A 4FK5C 4O43A 1NEIA 1RC7A 3KZYA 2YT4A 1BB8A 2KHXA 2EM2A 2EOEA 2R76A 2ENCA 5ADZA 1HNXE 4JV5E 5LMUE 2ENHA 5KL3A 2WBUA 5IWAE 1N36E 2YSOA 4ZYEA 2YRKA 4WPYA 1DI2A 5LLQA 2EMXA 1X47A 1XMOE 3K6QA 4R2EA 4DV1E 4LFBE 2FTXB 2EORA 3C6KA 3ECRA 5CFFE 3MSWA 2PRTA 3J7AG 1UHZA 4IS1C 2EOYA 5A6JA 2V8QB 4WSPA 1X3CA 3ADJA 2LRSA 1WXRA 3LLHA 4JYAE 2ZM6E 2YRHA 1SR9A 1ZR9A 5A6BD 1ZBTA 4WXCA 2EPUA 2UUAE 1X6EA 5A6BA 4L8NA 2BB8A 2ELZA 2EN8A 2E5LE 2LJUA 5A6KA 1YZ9A 4LU9A 4OX9E 3QG5C 1EH8A 2EMLA 2YTJA 3KWRA 2HJJA 3VYYA 2EMFA 2LT7A 2M1SA 4Q35B 1DGCA 2A25A 2EOMA 5A2QC 4X64E 2LTRA 4K0KE 2UXDE 2I13A 1ZBQA 2E72A 2EMCA 3EPJA 1X6FA 2EMBA 2EMWA 2L92A 1EH6A 4JI1E 2CPNA 2YTNA 1I94E 3C4BA 1STUA 1KYQA 2RS6A 2EQ0A 4JI8E 2EOQA 2EOIA 5AE2A 4X62E 5LL6R 2RPCA 3VYXA 3M99B 3HPZA 2EN7A 2LVHA 1N34E 4TUGA 2VE7C 1T39A 1EKZA 2K7IA 4KHPE 3EPLA 4GKJE 1NCSA 2EOXA 4DR4E 2J7JA 2I9IA 2EMKA 2L6MA 2EM8A 5KL4A 3P1XA 2EMAA 2N3HA 1YYKA 4R8OA 3VK6A 4M9VC 4DMIA 4F54A 1UBDC 4LF8E 2NABA 2RSIA 1A1FA 2V87A 4WSGA 2EMGA 4JI3E 2E1MA 3OMLA 4DKKA 4DR2E 2B7VA 2RTXA 5KL7A 2M9AA 3C6MA 4AQYE 2V83A 2N3GA 2JVAA 4L5NC 1IQOA 2DMIA 4LF6E 2EM6A 1N32E 1F2IG 4WFTA 4ZYDA 2JYAA 1DQ3A 3FIGA 1TF6A 4I8OA 3J7Yp 3BF2A 2YTPA 2EPKX 2EWLA 2JOBA 2YWQA 1HNZE 3IWBA 1QNTA 2V86A 1HNWE 1A1HA 2JPAA 2L2KB 4LF5E 4BMJA 1XNQE 1L4SA 1IBKE 4KWYA 4IJDA 4R03A 5KL5A 1J26A 4DV5E 1SFEA 2IHR1 3AUZA 1J5EE 1YYOA 3EPHA 5BR8E 1YFHA 5AASA 2EOZA 2EPPA 2EPOA 3EPKA 2YTOA 1WHQA 2MC5A 4RH8A 5KL6A 2EM5A 4GKKE 2YTEA 2EN2A 2ELYA 2LV2A 2M4IA 2V88A 1IBLE 4DV7E 1X5WA 4LFAE 4P78A 1RMDA 4R2AA 4O24A 4HEIA 4B3SE 1UILA 4JI5E 3LMLA 4N4RB 2G7HA 2RSMA 3EQ1A 2NUEA 4MLVA 1T4LB 2YU5A 2EM3A 2DIXA 3MHSC 3UK3C 4BCAA 4ZYGA 2EMYA 5IV8B 2EMIA 4KZSA 2JP9A 1YUIA 2HHHE 2YTIA 1O0WA 2DMYA 3F6GA 4JI2E 2LE2A 4DR7E 2BBGA 2EPCA 4O4KA 2EMHA 2RQLA 2Q8UA 2RS7A 5AE1A 5DNYA 2GLIA 4NXNE 2MDGA 2EM9A 1X6HA 2VQFE 2EPXA 2EL5A 2EN3A 4OOGC 4JI7E 2JWOA 3J80C 5F3WA 1A1LA 2YSPA 2B3TB 1P47A 2NUFA 1BBOA 3ADGA 1IQSA 2LO3A 1KJKA 4J8ZA 4DV3E 2EN6A 1TF3A 2L2MA 2WBTA 3L00A 4DR1E 1MEYC 1XMQE 5A6AA 2CT1A 1PJTA 1T4OA 3HQ1A 4X8WA 2YPNA 1EH7A 1WRJA 4F6NA 3C4TA
chains in the Genus database with same CATH topology
2N8XA 4RHBB 3BF2A 4KWYA 5IXMB 2R76A 2JXPA 4NHRA 4Q35B 5IV8B 4RH8A 5TSEA 4N4RB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2N8X A;  4RHB B;  3BF2 A;  4KWY A;  5IXM B;  2R76 A;  2JXP A;  4NHR A;  4Q35 B;  5IV8 B;  4RH8 A;  5TSE A;  4N4R B; 
#chains in the Genus database with same CATH topology
 3DF6 A;  4F6M A;  4NXM E;  1YUJ A;  5TSE A;  1JK1 A;  3OTO E;  2GPI A;  1ZAA C;  3JTZ A;  4DUY E;  1WJP A;  2UU9 E;  2EPN A;  2DRP A;  4ZYH A;  1LLM C;  2UXB E;  4DR3 E;  2WCC 3;  4M30 A;  4X65 E;  5T6J A;  4X66 E;  2V85 A;  1GZ6 A;  2UUB E;  2YTF A;  2JR1 A;  4HTG A;  4DV0 E;  1PDA A;  3H09 A;  2FGG A;  1PJS A;  1AH5 A;  3THO B;  3DJW A;  3HPS A;  3VHT B;  4X9J A;  3ADL A;  1PKP A;  2MDR A;  4WXD A;  3BGH A;  2LUP B;  2DB2 A;  2UXC E;  1YPN A;  4DV6 E;  3T1H E;  4BBY A;  1FKA E;  2DLK A;  2WZO A;  4DV2 E;  2CTD A;  2VQE E;  2EL4 A;  1ZU1 A;  4RHB B;  5IXM B;  4LF4 E;  1YYW A;  2K4V A;  1T4N A;  4DV4 E;  4BHB A;  3THN A;  2M7Q A;  1FJG E;  3JAM C;  3TQM A;  3T1Y E;  4B3T E;  1G2D C;  2EQ1 A;  1N3G A;  2VRD A;  1T38 A;  1TN9 A;  4F9B B;  1GQE A;  2LCE A;  2L3C A;  2EM7 A;  4JI4 E;  3IWD A;  2MKN A;  5A69 A;  1JK2 A;  5IT9 C;  2UUC E;  2B7T A;  1UN6 B;  2L3J A;  1AAY A;  1X48 A;  2ADR A;  2EJ4 A;  2YZT A;  3HTX A;  4YHH E;  4F9C B;  3IWC A;  3J81 C;  2HGH A;  4BC7 A;  2HC5 A;  2EOH A;  4LTY A;  4JI6 E;  4R2Q A;  2YTD A;  1HR0 E;  2L2N A;  1N33 E;  2DGC A;  3MHH C;  2EN4 A;  2L8T A;  2D9H A;  4R2S A;  2YU8 A;  1PJQ A;  2V89 A;  2EOS A;  4M2Z A;  3KZZ A;  1Z1B A;  2F8B A;  1MGT A;  2EOJ A;  4DUZ E;  4WYQ B;  2EOF A;  2EQ3 A;  3F6H A;  4NZV A;  5KL2 A;  2JOX A;  4R2R A;  4WX9 A;  2LBS B;  3AV0 A;  2DLQ A;  4LF9 E;  4B3R E;  4F2J C;  4F9A B;  4LF7 E;  2YRM A;  2B9D A;  5LMN E;  4Q28 A;  1IBM E;  4YY3 E;  2EP3 A;  2MKD A;  2EM0 A;  3JU0 A;  5AC5 A;  4LFC E;  4BC9 A;  5AE3 A;  4DR6 E;  2ODR C;  4R2C A;  3ZOQ B;  2NUG A;  2YTQ A;  1YSA C;  2ODR D;  2VF1 A;  1XNR E;  2KON A;  1BBG A;  2FV4 B;  1X49 A;  1WHN A;  2CSH A;  2EZ6 A;  2LUQ A;  4BS9 A;  3RMP A;  2DSY A;  2KOU A;  4P7D A;  4B3M E;  5AC4 A;  4GEQ B;  2YTG A;  4JI0 E;  1A1K A;  2NA2 A;  2WBS A;  2JY9 A;  2MC6 A;  2EPM X;  2EPL X;  2L33 A;  2EL6 A;  2EPZ A;  2LMZ A;  2F4V E;  2EPR A;  1GTK A;  4R2P A;  2N8X A;  4M0V A;  4R2D A;  1A1G A;  2EPA A;  1B69 A;  3BBG A;  5FLX C;  3HXL A;  2R1F A;  2EOO A;  1RQ0 A;  1A1J A;  1A1I A;  2H36 X;  4BHC A;  4NHR A;  2GHF A;  4DR5 E;  4GZN C;  2EN1 A;  1QU6 A;  4MLQ A;  1G2F C;  2LTS A;  2JXP A;  4O5G A;  4TUI A;  2ENA A;  3BID A;  3ADI A;  2EE8 A;  2LJH A;  1IMU A;  2EMZ A;  2EM4 A;  4FK5 C;  4O43 A;  1NEI A;  1RC7 A;  3KZY A;  2YT4 A;  1BB8 A;  2KHX A;  2EM2 A;  2EOE A;  2R76 A;  2ENC A;  5ADZ A;  1HNX E;  4JV5 E;  5LMU E;  2ENH A;  5KL3 A;  2WBU A;  5IWA E;  1N36 E;  2YSO A;  4ZYE A;  2YRK A;  4WPY A;  1DI2 A;  5LLQ A;  2EMX A;  1X47 A;  1XMO E;  3K6Q A;  4R2E A;  4DV1 E;  4LFB E;  2FTX B;  2EOR A;  3C6K A;  3ECR A;  5CFF E;  3MSW A;  2PRT A;  3J7A G;  1UHZ A;  4IS1 C;  2EOY A;  5A6J A;  2V8Q B;  4WSP A;  1X3C A;  3ADJ A;  2LRS A;  1WXR A;  3LLH A;  4JYA E;  2ZM6 E;  2YRH A;  1SR9 A;  1ZR9 A;  5A6B D;  1ZBT A;  4WXC A;  2EPU A;  2UUA E;  1X6E A;  5A6B A;  4L8N A;  2BB8 A;  2ELZ A;  2EN8 A;  2E5L E;  2LJU A;  5A6K A;  1YZ9 A;  4LU9 A;  4OX9 E;  3QG5 C;  1EH8 A;  2EML A;  2YTJ A;  3KWR A;  2HJJ A;  3VYY A;  2EMF A;  2LT7 A;  2M1S A;  4Q35 B;  1DGC A;  2A25 A;  2EOM A;  5A2Q C;  4X64 E;  2LTR A;  4K0K E;  2UXD E;  2I13 A;  1ZBQ A;  2E72 A;  2EMC A;  3EPJ A;  1X6F A;  2EMB A;  2EMW A;  2L92 A;  1EH6 A;  4JI1 E;  2CPN A;  2YTN A;  1I94 E;  3C4B A;  1STU A;  1KYQ A;  2RS6 A;  2EQ0 A;  4JI8 E;  2EOQ A;  2EOI A;  5AE2 A;  4X62 E;  5LL6 R;  2RPC A;  3VYX A;  3M99 B;  3HPZ A;  2EN7 A;  2LVH A;  1N34 E;  4TUG A;  2VE7 C;  1T39 A;  1EKZ A;  2K7I A;  4KHP E;  3EPL A;  4GKJ E;  1NCS A;  2EOX A;  4DR4 E;  2J7J A;  2I9I A;  2EMK A;  2L6M A;  2EM8 A;  5KL4 A;  3P1X A;  2EMA A;  2N3H A;  1YYK A;  4R8O A;  3VK6 A;  4M9V C;  4DMI A;  4F54 A;  1UBD C;  4LF8 E;  2NAB A;  2RSI A;  1A1F A;  2V87 A;  4WSG A;  2EMG A;  4JI3 E;  2E1M A;  3OML A;  4DKK A;  4DR2 E;  2B7V A;  2RTX A;  5KL7 A;  2M9A A;  3C6M A;  4AQY E;  2V83 A;  2N3G A;  2JVA A;  4L5N C;  1IQO A;  2DMI A;  4LF6 E;  2EM6 A;  1N32 E;  1F2I G;  4WFT A;  4ZYD A;  2JYA A;  1DQ3 A;  3FIG A;  1TF6 A;  4I8O A;  3J7Y p;  3BF2 A;  2YTP A;  2EPK X;  2EWL A;  2JOB A;  2YWQ A;  1HNZ E;  3IWB A;  1QNT A;  2V86 A;  1HNW E;  1A1H A;  2JPA A;  2L2K B;  4LF5 E;  4BMJ A;  1XNQ E;  1L4S A;  1IBK E;  4KWY A;  4IJD A;  4R03 A;  5KL5 A;  1J26 A;  4DV5 E;  1SFE A;  2IHR 1;  3AUZ A;  1J5E E;  1YYO A;  3EPH A;  5BR8 E;  1YFH A;  5AAS A;  2EOZ A;  2EPP A;  2EPO A;  3EPK A;  2YTO A;  1WHQ A;  2MC5 A;  4RH8 A;  5KL6 A;  2EM5 A;  4GKK E;  2YTE A;  2EN2 A;  2ELY A;  2LV2 A;  2M4I A;  2V88 A;  1IBL E;  4DV7 E;  1X5W A;  4LFA E;  4P78 A;  1RMD A;  4R2A A;  4O24 A;  4HEI A;  4B3S E;  1UIL A;  4JI5 E;  3LML A;  4N4R B;  2G7H A;  2RSM A;  3EQ1 A;  2NUE A;  4MLV A;  1T4L B;  2YU5 A;  2EM3 A;  2DIX A;  3MHS C;  3UK3 C;  4BCA A;  4ZYG A;  2EMY A;  5IV8 B;  2EMI A;  4KZS A;  2JP9 A;  1YUI A;  2HHH E;  2YTI A;  1O0W A;  2DMY A;  3F6G A;  4JI2 E;  2LE2 A;  4DR7 E;  2BBG A;  2EPC A;  4O4K A;  2EMH A;  2RQL A;  2Q8U A;  2RS7 A;  5AE1 A;  5DNY A;  2GLI A;  4NXN E;  2MDG A;  2EM9 A;  1X6H A;  2VQF E;  2EPX A;  2EL5 A;  2EN3 A;  4OOG C;  4JI7 E;  2JWO A;  3J80 C;  5F3W A;  1A1L A;  2YSP A;  2B3T B;  1P47 A;  2NUF A;  1BBO A;  3ADG A;  1IQS A;  2LO3 A;  1KJK A;  4J8Z A;  4DV3 E;  2EN6 A;  1TF3 A;  2L2M A;  2WBT A;  3L00 A;  4DR1 E;  1MEY C;  1XMQ E;  5A6A A;  2CT1 A;  1PJT A;  1T4O A;  3HQ1 A;  4X8W A;  2YPN A;  1EH7 A;  1WRJ A;  4F6N A;  3C4T A; 
#chains in the Genus database with same CATH homology
 2N8X A;  4RHB B;  3BF2 A;  4KWY A;  5IXM B;  2R76 A;  2JXP A;  4NHR A;  4Q35 B;  5IV8 B;  4RH8 A;  5TSE A;  4N4R B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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