The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
40
|
sequence length |
139
|
structure length |
139
|
Chain Sequence |
GMQTINATEIRNNFSYYIDTVVRDKPIAVKRNRDVLLFFSEQIIKDLLQDLKIHAELSKEDGIIIGTIDGFDLVVSGESEQEVIQKLAEDLLEYAQDYMNDFKLFYNAPNRKTHYPYILKVLLSSNIDEVKGYIYAEMV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of Putative ligand binding protein (YP_753395.1) from Syntrophomonas wolfei str. Goettingen at 1.80 A resolution
rcsb |
| molecule tags |
Ligand binding protein
|
| source organism |
Syntrophomonas wolfei subsp. wolfei
|
| molecule keywords |
Putative ligand binding protein
|
| total genus |
40
|
| structure length |
139
|
| sequence length |
139
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2009-10-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF12910 | PHD_like | Antitoxin of toxin-antitoxin, RelE / RelB, TA system |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Double Stranded RNA Binding Domain | ||
| Alpha Beta | 3-Layer(aba) Sandwich | YefM-like fold | YefM-like domain |
#chains in the Genus database with same CATH superfamily 2A6Q A; 3K6Q A; 3D55 A; 4ZLX A; 3CTO A; 3G5O A; 3OEI A; 3OEI E; 4ZM0 A; 3KH2 E; 4ZM2 A; 3HRY A; 3HS2 A; 3K33 B; 2ODK A; #chains in the Genus database with same CATH topology 4JI1 E; 3ADG A; 1TF6 A; 2EOE A; 2B9D A; 2EML A; 4HKK B; 2E1M A; 5C5P C; 2LJU A; 4LF4 E; 3EPH A; 5A6B D; 2DSY A; 1WHN A; 2UXC E; 4HLG C; 2MKD A; 5KL3 A; 1NCS A; 4FK5 C; 2B7V A; 1Z1B A; 3EPL A; 4HLF C; 2ADR A; 2EPR A; 4ZYH A; 4BMJ A; 4LF9 E; 4HLM C; 1A1J A; 2B7T A; 4L0V C; 5T6J A; 2L33 A; 2YTG A; 4Q35 B; 2EN7 A; 4B3M E; 4DUY E; 2UU9 E; 1T4L B; 1WXR A; 2NUE A; 4DR4 E; 3ADI A; 2LTR A; 1YSA C; 1RC7 A; 4DV7 E; 5KL5 A; 1DI2 A; 2WBS A; 1YYO A; 3KWR A; 1MGT A; 3MSW A; 4JV5 E; 4KZS A; 2YRH A; 4RHB B; 4ZYG A; 4JI7 E; 1LLM C; 3VYX A; 2YTD A; 3HPS A; 2LUQ A; 3KH2 E; 2EZ6 A; 4DR2 E; 3HTX A; 2JXP A; 2LMZ A; 4M2Z A; 4X8W A; 2EJ4 A; 4O43 A; 2EPP A; 4M9V C; 4KWY A; 1JK2 A; 1KJK A; 2HC5 A; 2EPL X; 2UUB E; 2EOF A; 1IBK E; 2LUP B; 1DGC A; 4DV1 E; 4KZL C; 2FTX B; 2DLQ A; 4DR3 E; 2ODK A; 2EN8 A; 1N3G A; 1EKZ A; 1NEI A; 4LF5 E; 1FJG E; 4L32 C; 5ADS B; 2EPU A; 2LCE A; 2VQF E; 4WSP A; 2EP3 A; 2UXD E; 2YRM A; 5ADT B; 5IT9 C; 3BF2 A; 4JI5 E; 4DV2 E; 3DF6 A; 3T1Y E; 2EMB A; 2V8Q B; 3ZOQ B; 2CPN A; 2EOY A; 2UXB E; 4GZN C; 1UBD C; 2EMZ A; 4R8O A; 2EQ0 A; 2EM4 A; 1A1F A; 4BHC A; 4L0I C; 1WRJ A; 1ZU1 A; 4YY3 E; 4UI7 C; 1J5E E; 4F9C B; 4HTG A; 2L3J A; 5DNY A; 1IBL E; 5IWA E; 2DLK A; 1DQ3 A; 3KZZ A; 1XNQ E; 4K0K E; 4L0S C; 2EPA A; 4IS1 C; 1L4S A; 4OOG C; 1A1I A; 1G2D C; 2EN4 A; 4DV6 E; 4R03 A; 1YUI A; 2E5L E; 4LFB E; 4GKK E; 4X65 E; 5LL6 R; 4LF7 E; 5FLX C; 1TF3 A; 4DR1 E; 2JYA A; 4P78 A; 4L34 C; 1X6E A; 4X9J A; 4JI2 E; 3KZY A; 2YZT A; 1T39 A; 4R2P A; 4OX9 E; 2L92 A; 2JWO A; 2EOJ A; 2KON A; 4L10 C; 4ZYE A; 4HKN C; 5AE1 A; 4DV3 E; 3G5O A; 4F54 A; 3THO B; 2HJJ A; 4TUI A; 2ENC A; 2V88 A; 3OEI E; 2N3H A; 1QU6 A; 2ODR D; 2K7I A; 2Q8U A; 2I9I A; 2EQ1 A; 1T38 A; 2GHF A; 5ADZ A; 2LBS B; 3EQ1 A; 4LFC E; 2JY9 A; 2L2M A; 2DMY A; 3C4B A; 1IMU A; 2EMG A; 1EH7 A; 2WBU A; 2EPK X; 4NZV A; 2M1S A; 1RQ0 A; 2YTO A; 4BCA A; 2EPZ A; 2DMI A; 2KHX A; 1X49 A; 2LT7 A; 2CTD A; 4ZLX A; 2YTQ A; 4I8O A; 2EPO A; 2GLI A; 2BBG A; 3BGH A; 1GTK A; 4O24 A; 5AC4 A; 4YHH E; 4B3T E; 2ENH A; 4IJD A; 2RS6 A; 3C4T A; 5LMU E; 2RTX A; 2EM5 A; 2YTJ A; 2ELY A; 1TN9 A; 4DR6 E; 1X47 A; 4BHB A; 4DMI A; 1YZ9 A; 3JAM C; 4MLQ A; 2A25 A; 2ELZ A; 2JOX A; 1JK1 A; 1O0W A; 2EOS A; 2IHR 1; 4BS9 A; 4DKK A; 2ODR C; 2WCC 3; 2EOH A; 3RMP A; 1XMO E; 4F9B B; 2EMY A; 5ADR B; 1XMQ E; 4O4K A; 4R2S A; 3EPJ A; 5TSE A; 1PJS A; 2L6M A; 4RH8 A; 2I13 A; 2FGG A; 2EMW A; 2EPX A; 3F6H A; 4P7D A; 2LRS A; 4L0T C; 2G7H A; 1YYK A; 2EOI A; 3JTZ A; 5IXM B; 4R2D A; 4UI4 C; 2E72 A; 4R2E A; 2L2K B; 4DR7 E; 2EMF A; 1X48 A; 2YRK A; 4DR5 E; 4MLV A; 1P47 A; 1F2I G; 3J7A G; 4L5N C; 1UHZ A; 3MHS C; 4N4R B; 4JYA E; 3HXL A; 5KL7 A; 2M9A A; 3M99 B; 4UVP B; 1UIL A; 1J26 A; 4BC7 A; 2VE7 C; 1YPN A; 4NXM E; 4WFT A; 3IWB A; 1PDA A; 1IQO A; 1A1K A; 2A6Q A; 2VQE E; 1ZAA C; 4WX9 A; 4DV4 E; 2EL6 A; 2EL5 A; 2M7Q A; 2EL4 A; 2ZIX B; 3IWD A; 1N34 E; 2HHH E; 3ADJ A; 4L2F C; 4HEI A; 1AH5 A; 4DV5 E; 4ZM0 A; 1A1G A; 2DIX A; 2LVH A; 2EM7 A; 1BBO A; 3CTO A; 1HNX E; 4M30 A; 3C6K A; 4WXD A; 4BC9 A; 5F3W A; 2YTF A; 2NUG A; 2EN6 A; 4L0B C; 2PRT A; 4F2J C; 1N36 E; 1A1L A; 2WBT A; 1X3C A; 1GZ6 A; 3UK3 C; 2L8T A; 3ECR A; 4JI8 E; 4HLK C; 3OEI A; 2EM2 A; 4M0V A; 2UUC E; 2YTP A; 1N33 E; 5KL6 A; 2JR1 A; 5BR8 E; 2EOZ A; 4LU9 A; 3LLH A; 2LJH A; 2GPI A; 2K4V A; 5AAS A; 4R2C A; 3AV0 A; 5C5Q C; 5LMN E; 4F6M A; 2EN1 A; 4O5G A; 3DJW A; 1RMD A; 2L3C A; 1X6F A; 4BBY A; 2JPA A; 4X66 E; 2NAB A; 4JI0 E; 2EM6 A; 2EN3 A; 1PJT A; 3THN A; 4L2G C; 4X62 E; 2EPN A; 4JI6 E; 3VK6 A; 2RQL A; 2EPM X; 1ZBT A; 1EH8 A; 2M4I A; 1SFE A; 5A6J A; 3F6G A; 5A69 A; 2EOX A; 2H36 X; 2NA2 A; 2V89 A; 2HGH A; 4J8Z A; 1STU A; 4KZQ C; 3VHT B; 2V87 A; 3L00 A; 1IQS A; 1XNR E; 1WHQ A; 1HNZ E; 1BBG A; 2YT4 A; 4GEQ B; 4F9A B; 2B3T B; 3VYY A; 4HLH C; 2JOB A; 1G2F C; 3IWC A; 2JVA A; 4L2K C; 2V86 A; 2MDG A; 3HJ6 A; 1ZBQ A; 2V83 A; 3C6M A; 4HMH C; 1UN6 B; 2LO3 A; 2EOR A; 1IBM E; 2WZO A; 4L33 C; 2CSH A; 4UI5 C; 2EMK A; 2MC6 A; 5AC5 A; 1QNT A; 4ZYD A; 2DGC A; 2NUF A; 2EM0 A; 5CFF E; 1I94 E; 3QG5 C; 3ADL A; 2LTS A; 3T1H E; 2CT1 A; 2VRD A; 2EOQ A; 3JU0 A; 2YTI A; 5AE2 A; 1KYQ A; 2EM3 A; 2LV2 A; 1SR9 A; 2RSM A; 4LF6 E; 5IV8 B; 3K33 B; 2DB2 A; 4NHR A; 2EM9 A; 2YTN A; 1BB8 A; 3J7Y p; 2JP9 A; 3AUZ A; 3BID A; 3K6Q A; 3D55 A; 4NXN E; 5LLQ A; 4AQY E; 4F6N A; 2EPC A; 2DRP A; 2UUA E; 1FKA E; 2MDR A; 3FIG A; 4Q28 A; 3EPK A; 4UI3 C; 2RS7 A; 4ZM2 A; 3BBG A; 3HRY A; 2RPC A; 3HPZ A; 1PJQ A; 2R76 A; 1ZR9 A; 5AE3 A; 2BB8 A; 2KOU A; 4L8N A; 2J7J A; 2F4V E; 4UI8 C; 3J81 C; 2RSI A; 2VF1 A; 1HNW E; 3LML A; 2EMI A; 4HKI C; 4LF8 E; 5A6A A; 4UI6 C; 2EMH A; 2EOM A; 4JI3 E; 1T4O A; 5KL4 A; 1YYW A; 3HQ1 A; 4X64 E; 2F8B A; 4WPY A; 5KL2 A; 3MHH C; 2EE8 A; 2EMX A; 2R1F A; 1PKP A; 2YSO A; 4LTY A; 2YTE A; 4R2A A; 4HL5 C; 2D9H A; 2YU8 A; 5ADQ B; 1T4N A; 3H09 A; 2ZM6 E; 4B3R E; 4L09 C; 4TUG A; 2MKN A; 2FV4 B; 5FPF C; 4B3S E; 3J80 C; 2N8X A; 2YU5 A; 5A6K A; 3TQM A; 3OML A; 4LFA E; 4R2R A; 4KZU C; 1YFH A; 4DV0 E; 2YWQ A; 2EQ3 A; 2EN2 A; 2L2N A; 2ENA A; 4KHP E; 1AAY A; 3OTO E; 1X6H A; 4JI4 E; 1EH6 A; 2N3G A; 5A2Q C; 1YUJ A; 2EMA A; 2EWL A; 1B69 A; 2EMC A; 5C5R C; 2LE2 A; 3P1X A; 1GQE A; 4WXC A; 2MC5 A; 5A6B A; 4L31 C; 2V85 A; 2EM8 A; 1MEY C; 4DUZ E; 4GKJ E; 3HS2 A; 1A1H A; 4R2Q A; 1HR0 E; 2YSP A; 2EOO A; 4WSG A; 1X5W A; 1WJP A; 4WYQ B; 1N32 E; 2YPN A; #chains in the Genus database with same CATH homology 4JI1 E; 4OOG C; 4JYA E; 3ADG A; 3HXL A; 1ZBQ A; 2B9D A; 4DV6 E; 4R03 A; 2E1M A; 2V83 A; 1UIL A; 2E5L E; 4LFB E; 1J26 A; 4BC7 A; 4GKK E; 4LF4 E; 1IBM E; 2WZO A; 4X65 E; 5LL6 R; 4LF7 E; 2DSY A; 5FLX C; 1WHN A; 4DR1 E; 2VE7 C; 2MC6 A; 4WFT A; 4NXM E; 3IWB A; 2NUF A; 4P78 A; 5CFF E; 1I94 E; 2UXC E; 4JI2 E; 2A6Q A; 2YZT A; 2VQE E; 3ADL A; 2LTS A; 3T1H E; 4OX9 E; 2L92 A; 4DV4 E; 2JWO A; 2KON A; 2M7Q A; 2B7V A; 3JU0 A; 5AE1 A; 3IWD A; 4DV3 E; 3G5O A; 4F54 A; 1N34 E; 2HHH E; 3ADJ A; 5AE2 A; 4TUI A; 1SR9 A; 2RSM A; 4DV5 E; 2V88 A; 4LF6 E; 3K33 B; 3OEI E; 4ZM0 A; 4BMJ A; 4LF9 E; 2DB2 A; 2N3H A; 1QU6 A; 2DIX A; 2ODR D; 3CTO A; 1HNX E; 2B7T A; 4M30 A; 5T6J A; 2L33 A; 3J7Y p; 4BC9 A; 5F3W A; 3AUZ A; 3K6Q A; 3D55 A; 4B3M E; 5ADZ A; 4DUY E; 2LBS B; 1T4L B; 2UU9 E; 4NXN E; 1WXR A; 2NUE A; 4LFC E; 2JY9 A; 2L2M A; 4AQY E; 2NUG A; 3ADI A; 2DMY A; 2LTR A; 3C4B A; 4DR4 E; 1RC7 A; 2UUA E; 4DV7 E; 1N36 E; 1FKA E; 2MDR A; 3FIG A; 2M1S A; 4Q28 A; 1RQ0 A; 2RS7 A; 1YYO A; 3KWR A; 1GZ6 A; 1DI2 A; 3MSW A; 4BCA A; 2L8T A; 4JV5 E; 3HRY A; 4ZM2 A; 4KZS A; 2KHX A; 1X49 A; 3HPZ A; 5AE3 A; 4L8N A; 2KOU A; 4JI8 E; 2F4V E; 4JI7 E; 4ZLX A; 3J81 C; 3OEI A; 4I8O A; 3VYX A; 2VF1 A; 4M0V A; 3HPS A; 3LML A; 1HNW E; 2LUQ A; 4LF8 E; 3KH2 E; 2EZ6 A; 4DR2 E; 3HTX A; 2UUC E; 4YHH E; 4B3T E; 4JI3 E; 2LMZ A; 4M2Z A; 1T4O A; 4X8W A; 1N33 E; 2JR1 A; 5BR8 E; 1YYW A; 3HQ1 A; 3LLH A; 2F8B A; 4LU9 A; 2RS6 A; 2LJH A; 4WPY A; 2K4V A; 3C4T A; 4X64 E; 5LMU E; 5AAS A; 2RTX A; 2UUB E; 1PKP A; 1IBK E; 4DR6 E; 2LUP B; 1X47 A; 4LTY A; 4DV1 E; 4DMI A; 1T4N A; 3H09 A; 2FTX B; 2ZM6 E; 4B3R E; 1YZ9 A; 4TUG A; 3JAM C; 4DR3 E; 2ODK A; 3AV0 A; 5LMN E; 2FV4 B; 4B3S E; 3J80 C; 1EKZ A; 3DJW A; 2L3C A; 4BBY A; 3OML A; 2JOX A; 4X66 E; 4JI0 E; 4LF5 E; 4LFA E; 1FJG E; 1O0W A; 4BS9 A; 2IHR 1; 4DKK A; 4DV0 E; 2ODR C; 2VQF E; 4X62 E; 4WSP A; 4JI6 E; 2L2N A; 2UXD E; 3RMP A; 1XMO E; 5IT9 C; 4JI5 E; 3VK6 A; 4DV2 E; 3DF6 A; 4KHP E; 4F9B B; 3T1Y E; 3OTO E; 4JI4 E; 1ZBT A; 2V8Q B; 2N3G A; 5A2Q C; 2M4I A; 3ZOQ B; 1XMQ E; 2EWL A; 2CPN A; 2UXB E; 2L6M A; 2LE2 A; 3F6G A; 3P1X A; 1GQE A; 2H36 X; 2FGG A; 2NA2 A; 2V89 A; 2MC5 A; 3F6H A; 4P7D A; 4R8O A; 2LRS A; 4J8Z A; 1STU A; 2G7H A; 2V85 A; 1YYK A; 4YY3 E; 3JTZ A; 2V87 A; 4DUZ E; 1J5E E; 1XNR E; 1WHQ A; 4F9C B; 1HNZ E; 4GKJ E; 2L3J A; 2YT4 A; 3HS2 A; 5DNY A; 4GEQ B; 4F9A B; 2B3T B; 2L2K B; 5IWA E; 1IBL E; 1HR0 E; 3VYY A; 1DQ3 A; 1XNQ E; 4DR7 E; 2JOB A; 1X48 A; 4DR5 E; 3J7A G; 4K0K E; 3IWC A; 2JVA A; 4WYQ B; 4L5N C; 1UHZ A; 1N32 E; 2V86 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
