The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
68
|
sequence length |
254
|
structure length |
242
|
Chain Sequence |
QKGYLYGSGSATSKEASKQKALADLVASISVVVNSQIHIQKSRINLKTDDLELNNVEIVNQEVQKGIYYTRVRINQNLFLQGLRDKYNALYGQFSTLMPKVCKGVFLQQSKSMGDLLAKAMPIERILKAYSVPVGSLENYEKIYYQNAFKPKVQITFDNNSDAEIKAALISAYARVLTPSDEEKLYQIKNEVFTDSANGITRIRVVVSASDCQGTPVLNRSLEVDEKNKNFAITRLQSLLYK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of the secreted protein HP1454 from the human pathogen Helicobacter pylori.
pubmed doi rcsb |
| molecule keywords |
LPP20 lipofamily protein
|
| molecule tags |
Unknown function
|
| source organism |
Helicobacter pylori r046wa
|
| total genus |
68
|
| structure length |
242
|
| sequence length |
254
|
| ec nomenclature | |
| pdb deposition date | 2013-05-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02169 | LPP20 | LPP20 lipoprotein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Endonuclease I-creI | Acetamidase/Formamidase-like domains | ||
| Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Double Stranded RNA Binding Domain |
#chains in the Genus database with same CATH superfamily 2F4L A; 4KZS A; #chains in the Genus database with same CATH topology 1QNT A; 3LLH A; 2LTR A; 4LOX A; 4B3T E; 3H09 A; 4WFT A; 1YUJ A; 3TQM A; 4DV0 E; 1SFE A; 1ZBQ A; 1WXR A; 4DV5 E; 1B69 A; 3ADL A; 4DR1 E; 2LRS A; 2UU9 E; 1IMU A; 4ZYE A; 2CW7 A; 5LL6 R; 3C6K A; 4UN7 A; 1RQ0 A; 4UN7 G; 4YHX A; 1EH8 A; 5E5S A; 3EPJ A; 4DV1 E; 2VF1 A; 2EJ4 A; 2B3T B; 2YTQ A; 4OX9 E; 3HTX A; 2EMI A; 2EOE A; 3BBG A; 2YRH A; 3MHH C; 2EPL X; 4EFJ A; 3EQ1 A; 4AQX A; 2EMG A; 1TF6 A; 1T4O A; 4GKJ E; 2EN7 A; 1WJP A; 2JY9 A; 4GZN C; 2VRD A; 4DV6 E; 5TSE A; 2YTE A; 4ZYD A; 2VBL B; 2LCE A; 2I3P A; 3KZY A; 4DV7 E; 3IWB A; 2ELY A; 4Q35 B; 3VYX A; 1B24 A; 5IV8 B; 4BMJ A; 2F8B A; 2YSP A; 3MIP A; 3JAM C; 2YTI A; 3MHS C; 2WCC 3; 5A74 A; 2V83 A; 3FIG A; 4AAD A; 2EP3 A; 4IS1 C; 3F6H A; 4HEI A; 4JI6 E; 3J7A G; 4Z1X A; 2EE8 A; 2DRP A; 1VDE A; 3UK3 C; 3HYI A; 2NAB A; 5AKM A; 2LJU A; 5E5O A; 5A6J A; 1P47 A; 1X48 A; 4D6O A; 2WBU A; 4LFC E; 3OML A; 1UM2 A; 4DV3 E; 1N36 E; 2YU5 A; 2DLK A; 2NUE A; 2EPP A; 4WXD A; 3JU0 A; 1O0W A; 3HPZ A; 4JI4 E; 4B3M E; 4F6M A; 2V87 A; 2CSH A; 2YTP A; 2EOY A; 5A6B D; 1X5W A; 3EH8 A; 4KWY A; 1YUI A; 1G2D C; 2I3Q A; 2BBG A; 2EMA A; 4AQU A; 5AC4 A; 4BHB A; 2RS7 A; 2VBO A; 4B3R E; 2L3J A; 2UUB E; 3C4T A; 4WSG A; 3VK6 A; 2WBS A; 2EL6 A; 1RMD A; 3HXL A; 2F4V E; 2VS8 A; 4M9V C; 3MXA A; 2UXB E; 2YPN A; 2DLQ A; 3ADI A; 2J7J A; 1DFA A; 2HJJ A; 5A78 A; 2K7I A; 2ENC A; 5KL3 A; 4WPY A; 4R2P A; 4NZV A; 5A0W A; 3KZZ A; 3MXB A; 4DV2 E; 2EN1 A; 2YZT A; 4UN9 G; 2JVA A; 1RC7 A; 1LLM C; 4JI8 E; 4J8Z A; 4R03 A; 4X65 E; 4R2C A; 2EN2 A; 3MX9 A; 2JP9 A; 2EQ1 A; 2FLD A; 2B7T A; 2EM8 A; 3T1H E; 1IQS A; 2YTN A; 2LV2 A; 2F4L A; 1DQ3 A; 1P8K Z; 2PRT A; 2O7M A; 2H36 X; 4LQ0 A; 4WXC A; 2EM9 A; 3OOR A; 2EM3 A; 5DNY A; 3IWC A; 3THN A; 4JI1 E; 4I8O A; 2YTJ A; 1UIL A; 2YRK A; 1N3F A; 2CTD A; 3BID A; 1YFH A; 2DCH X; 2M1S A; 2LBS B; 2RSM A; 1AH5 A; 2EPO A; 1PKP A; 2CPN A; 4WX9 A; 2EOM A; 2N3H A; 2DSY A; 4LF7 E; 4Z20 A; 2EN6 A; 2EOJ A; 5A0M B; 2JOB A; 1UN6 B; 3FD2 A; 2ZM6 E; 2V89 A; 2EM6 A; 2LTS A; 4BCA A; 2YSO A; 1DI2 A; 2XE0 A; 1GQE A; 4O24 A; 4UNC A; 2MKN A; 1STU A; 2VQF E; 2L2M A; 1JVA A; 1AF5 A; 1UHZ A; 1X49 A; 2EML A; 1SR9 A; 2MC5 A; 1T39 A; 4B3S E; 4DR7 E; 1X3C A; 2EOS A; 5A69 A; 2JWO A; 4UN8 G; 2WBT A; 4JI3 E; 4AAE A; 4UNA A; 1LWS A; 1G2F C; 4TUI A; 1EH6 A; 2VBN B; 2A25 A; 3DF6 A; 4GKK E; 2ELZ A; 2EPK X; 2EMZ A; 2NUF A; 1X6E A; 4DV4 E; 4P7D A; 2EOH A; 1MOW A; 2RQL A; 4DR2 E; 2VBJ A; 5A6K A; 5KL5 A; 2EOQ A; 2CW8 A; 2HHH E; 4UNB A; 4RHB B; 2LT7 A; 2HGH A; 5AE1 A; 1FKA E; 2I9I A; 1G9Y A; 5BR8 E; 1X47 A; 2B9D A; 2EM7 A; 4RH8 A; 2VS7 A; 2EM4 A; 1A1K A; 3ZOQ B; 1NCS A; 2KHX A; 1Z1B A; 2M4I A; 1YZ9 A; 1ZAA C; 3QQY A; 2VE7 C; 4JI2 E; 4O5G A; 4O43 A; 1M5X A; 2EN4 A; 5AK9 A; 3ADJ A; 2ENH A; 4IJD A; 2EOR A; 1MGT A; 3C4B A; 1XNR E; 1KJK A; 3JTZ A; 4DKK A; 4DR3 E; 5AKN A; 2L8T A; 2YT4 A; 1GZ6 A; 5E67 A; 4P78 A; 4Z1Z A; 4AAF A; 5A72 A; 4JV5 E; 3OTO E; 3VHT B; 4F9A B; 2KOU A; 3MSW A; 2YRM A; 2IHR 1; 4F6N A; 3L00 A; 4X64 E; 1U0D A; 4DUY E; 1JK2 A; 1A1L A; 4YHH E; 2VBL A; 4OOG C; 5KL6 A; 3EPL A; 2EOF A; 2EPN A; 3P1X A; 4BBY A; 2DB2 A; 2EMF A; 4R2E A; 3J7Y p; 2QOJ Z; 2NA2 A; 4FK5 C; 2DMI A; 2E5L E; 4M0V A; 2WZO A; 4KZS A; 2NUG A; 2FTX B; 3THO B; 5F3W A; 4KHP E; 2UUA E; 4F54 A; 2JOX A; 4M2Z A; 4AAG A; 1NEI A; 2MDR A; 1I94 E; 4UN9 A; 3C0X A; 5IT9 C; 4R2D A; 1YYO A; 1IQO A; 4DMI A; 1YSA C; 1X6F A; 1N3E A; 3E54 A; 4BC7 A; 4GEQ B; 2ENA A; 1GTK A; 1WHQ A; 3T1Y E; 5KL7 A; 2EOX A; 2B7V A; 2N3G A; 2L2K B; 2K4V A; 4X9J A; 1A1I A; 4BC9 A; 4LF4 E; 2JYA A; 2V88 A; 4F9C B; 5AE3 A; 4JI0 E; 4K0K E; 3ECR A; 1YPN A; 5IXM B; 2BB8 A; 1EKZ A; 4R2R A; 1HNZ E; 4YY3 E; 2EOO A; 4NHR A; 1A1F A; 4LF5 E; 1PDA A; 4X8W A; 2LVH A; 2MC6 A; 4O4K A; 1DGC A; 2DMY A; 2EPC A; 2LO3 A; 2EPA A; 2FV4 B; 2RTX A; 2EMX A; 2I13 A; 2FGG A; 1XMO E; 2YTD A; 3BF2 A; 2GHF A; 4N4R B; 1TN9 A; 4UN8 A; 5T6J A; 1QU6 A; 1HNX E; 2EL5 A; 1MEY C; 2UUC E; 4LF8 E; 4BS9 A; 5LMU E; 4DUZ E; 1R7M A; 2E72 A; 2EL4 A; 3F6G A; 2VQE E; 4JI7 E; 1FJG E; 1X6H A; 4F2J C; 5LLQ A; 2EN3 A; 4LU9 A; 2EPZ A; 2EPU A; 1BBG A; 1PJT A; 1N34 E; 1UBD C; 2GLI A; 4DR6 E; 4DR4 E; 3J80 C; 1A1J A; 1ZU1 A; 4LFA E; 2L6M A; 2N8X A; 4L5N C; 1T4L B; 1BP7 A; 1BBO A; 3OOL A; 2LUQ A; 3HQ1 A; 2E1M A; 2UXC E; 2L92 A; 2HC5 A; 3ADG A; 4YIT A; 1T9J A; 2R1F A; 1TF3 A; 3K6Q A; 5A0M A; 4HTG A; 4AQY E; 2ODR D; 2V8Q B; 4LF6 E; 1N3G A; 4LF9 E; 2RS6 A; 2YTO A; 3LML A; 4NXN E; 5ADZ A; 3HPS A; 4BHC A; 3AV0 A; 3MIS A; 2CT1 A; 4TUG A; 1IBM E; 1IBK E; 4X66 E; 1WHN A; 2LMZ A; 1XNQ E; 2MDG A; 4WYQ B; 2LUP B; 3KWR A; 1LWT A; 3QG5 C; 1PJQ A; 3BGH A; 2VBO B; 2M9A A; 3M99 B; 4LTY A; 1T4N A; 4DR5 E; 4R8O A; 2YTF A; 2EMK A; 2VBN A; 2EPR A; 1IBL E; 1AAY A; 2EPX A; 1HNW E; 1T9I A; 4NXM E; 2JR1 A; 2YTG A; 4F9B B; 4ZYG A; 2EM5 A; 2JPA A; 2L2N A; 5E63 A; 2L3C A; 2GPI A; 1EH7 A; 3MXB B; 5A2Q C; 4WSP A; 4D6N A; 2Q8U A; 5A6B A; 5KL2 A; 2EQ3 A; 5IWA E; 2M7Q A; 1G9Z A; 2EX5 A; 1N32 E; 2EOZ A; 2EOI A; 3RMP A; 5KL4 A; 2EMB A; 4JI5 E; 2EPM X; 1F2I G; 4R2A A; 3UVF A; 2EZ6 A; 2D9H A; 2LE2 A; 1A1G A; 2MKD A; 2EMC A; 2ADR A; 2RPC A; 1ZR9 A; 2YU8 A; 1L4S A; 5A6A A; 5FLX C; 2JXP A; 3VYY A; 4X62 E; 4MLQ A; 5LMN E; 4ZYH A; 4JYA E; 2EMH A; 3AUZ A; 3KO2 A; 2EM2 A; 3C0W A; 3J81 C; 1J5E E; 2UXD E; 2XE0 B; 4R2S A; 2RSI A; 3HYJ A; 1U0C A; 1PJS A; 1WRJ A; 3IWD A; 1YYK A; 2DIX A; 1A1H A; 2EN8 A; 5AAS A; 3R7P A; 2V85 A; 2KON A; 4Q28 A; 1N33 E; 1KYQ A; 2DGC A; 3C6M A; 2L33 A; 2ODR C; 4LFB E; 5AE2 A; 2V86 A; 2R76 A; 2EWL A; 2LJH A; 2AB5 A; 4AAB A; 2EMW A; 4MLV A; 4UT0 A; 1HR0 E; 4M30 A; 5CFF E; 3EPH A; 2EMY A; 2YWQ A; 5A77 A; 1JK1 A; 2VBJ B; 3DJW A; 1ZBT A; 4L8N A; 4R2Q A; 2EM0 A; 3EPK A; 4YIS A; 1BB8 A; 2EQ0 A; 1XMQ E; 5AKF A; 5AC5 A; 1T38 A; 1J26 A; 1YYW A; 2G7H A; 1EF0 A; #chains in the Genus database with same CATH homology 3LLH A; 4YHH E; 2LTR A; 4B3T E; 4OOG C; 3AV0 A; 3H09 A; 4WFT A; 4TUG A; 3P1X A; 4BBY A; 2B7T A; 2DB2 A; 4DV0 E; 1ZBQ A; 4DV5 E; 1WXR A; 4X66 E; 1WHN A; 3T1H E; 1IBK E; 4DR1 E; 1IBM E; 3J7Y p; 3ADL A; 2LRS A; 2LMZ A; 2NA2 A; 2UU9 E; 2F4L A; 1XNQ E; 1DQ3 A; 4WYQ B; 2LUP B; 3KWR A; 2E5L E; 2H36 X; 4M0V A; 2WZO A; 5LL6 R; 4KZS A; 5DNY A; 2NUG A; 4LTY A; 1RQ0 A; 1T4N A; 2FTX B; 3IWC A; 4R8O A; 4DR5 E; 4JI1 E; 4I8O A; 5F3W A; 4DV1 E; 4KHP E; 2UUA E; 2VF1 A; 1UIL A; 2B3T B; 2JOX A; 4F54 A; 1IBL E; 4M2Z A; 1HNW E; 2MDR A; 2M1S A; 2LBS B; 2JR1 A; 1I94 E; 2RSM A; 4NXM E; 4OX9 E; 4F9B B; 3HTX A; 5IT9 C; 1PKP A; 2CPN A; 1YYO A; 4LF7 E; 2N3H A; 2DSY A; 2JOB A; 2L2N A; 4GKJ E; 1T4O A; 2L3C A; 4DMI A; 2ZM6 E; 2V89 A; 2LTS A; 4BCA A; 2JY9 A; 5A2Q C; 4WSP A; 1DI2 A; 1GQE A; 5IWA E; 4DV6 E; 1STU A; 2M7Q A; 2VQF E; 1N32 E; 2L2M A; 3RMP A; 4BC7 A; 1UHZ A; 4GEQ B; 1WHQ A; 3T1Y E; 4DV7 E; 4JI5 E; 1X49 A; 3IWB A; 2MC5 A; 1SR9 A; 4B3S E; 4DR7 E; 2B7V A; 2N3G A; 2L2K B; 3VYX A; 2K4V A; 4BMJ A; 2JWO A; 4BC9 A; 2F8B A; 4JI3 E; 4LF4 E; 2V88 A; 4F9C B; 5AE3 A; 4JI0 E; 2EZ6 A; 4K0K E; 2LE2 A; 3JAM C; 4TUI A; 2V83 A; 3FIG A; 1EKZ A; 1HNZ E; 4GKK E; 3DF6 A; 4YY3 E; 5FLX C; 3F6H A; 2NUF A; 4LF5 E; 3VYY A; 4X62 E; 4JI6 E; 3J7A G; 4DV4 E; 4X8W A; 5LMN E; 2MC6 A; 4P7D A; 4JYA E; 2DMY A; 3AUZ A; 4DR2 E; 1X48 A; 3J81 C; 2FV4 B; 2RTX A; 2HHH E; 1J5E E; 2UXD E; 5AE1 A; 1FKA E; 4LFC E; 3OML A; 2FGG A; 1XMO E; 5BR8 E; 1X47 A; 4DV3 E; 2B9D A; 1N36 E; 3IWD A; 2NUE A; 1YYK A; 2DIX A; 3JU0 A; 1O0W A; 3HPZ A; 1QU6 A; 2KHX A; 5T6J A; 3ZOQ B; 2M4I A; 1HNX E; 2UUC E; 4LF8 E; 1YZ9 A; 4BS9 A; 5AAS A; 5LMU E; 4DUZ E; 2V87 A; 4B3M E; 2V85 A; 4JI4 E; 2VE7 C; 3F6G A; 4JI2 E; 2KON A; 4Q28 A; 4JI7 E; 2VQE E; 1FJG E; 1N33 E; 4LU9 A; 2L33 A; 2ODR C; 4LFB E; 5AE2 A; 3ADJ A; 2RS7 A; 2V86 A; 2EWL A; 4B3R E; 1N34 E; 2LJH A; 4DR6 E; 3C4B A; 1XNR E; 4DR4 E; 3J80 C; 3JTZ A; 4DKK A; 4DR3 E; 2L3J A; 2L8T A; 2UUB E; 3C4T A; 2YT4 A; 4LFA E; 1HR0 E; 1GZ6 A; 2L6M A; 4L5N C; 4P78 A; 4M30 A; 3VK6 A; 3HXL A; 5CFF E; 1T4L B; 2F4V E; 2LUQ A; 3HQ1 A; 2UXB E; 2E1M A; 2UXC E; 2L92 A; 3ADI A; 4JV5 E; 3ADG A; 3OTO E; 3DJW A; 4WPY A; 3K6Q A; 1ZBT A; 4AQY E; 2ODR D; 2V8Q B; 4L8N A; 4LF6 E; 4LF9 E; 4F9A B; 2RS6 A; 4DV2 E; 2YZT A; 1XMQ E; 2KOU A; 3LML A; 3MSW A; 2IHR 1; 1J26 A; 1YYW A; 4X64 E; 2G7H A; 2JVA A; 1RC7 A; 4NXN E; 4JI8 E; 5ADZ A; 4J8Z A; 4R03 A; 4X65 E; 4DUY E; 3HPS A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
