The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
55
|
sequence length |
238
|
structure length |
219
|
Chain Sequence |
LSFPRYNVAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIVYGIRLEHFYMMPVNSGVMYPHLMEGFLPFSNLVTHLDSFLPICRVNDFETADILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLEIPSAVYVAQLYHQVSKIEWEYECEPGMVKGIHQPIHLDSTQLSRKFISDYLWSLV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Implications for Kinetochore-Microtubule Attachment from the Structure of an Engineered Ndc80 Complex
pubmed doi rcsb |
| molecule tags |
Cell cycle
|
| source organism |
Homo sapiens
|
| molecule keywords |
KINETOCHORE PROTEIN HEC1, KINETOCHORE PROTEIN SPC25
|
| total genus |
55
|
| structure length |
219
|
| sequence length |
238
|
| chains with identical sequence |
D
|
| ec nomenclature | |
| pdb deposition date | 2007-10-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| C | PF03800 | Nuf2 | Nuf2 family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Actin-binding Protein, T-fimbrin; domain 1 | Actin-binding Protein, T-fimbrin; domain 1 | ||
| Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Double Stranded RNA Binding Domain |
#chains in the Genus database with same CATH superfamily 2VE7 C; #chains in the Genus database with same CATH topology 3C6M A; 1O0W A; 1SR9 A; 1WJO A; 4DV0 E; 2NAB A; 4LFB E; 1EH8 A; 4Q57 B; 4DR5 E; 3ADI A; 2EZ6 A; 4R03 A; 2LJU A; 2YTD A; 4JI2 E; 1RQ0 A; 1ZBT A; 2RS6 A; 2UXC E; 1X47 A; 2EOO A; 4NXM E; 2YTG A; 2EN2 A; 4TUG A; 4O5G A; 5A6J A; 4B3R E; 1EH7 A; 1PJQ A; 4ZYD A; 4JI4 E; 5A6B D; 4X65 E; 1JK1 A; 1WIX A; 3JU0 A; 1YFH A; 2EML A; 4RH8 A; 2HKP A; 3L00 A; 4LF8 E; 3VK6 A; 2EPL X; 2VE7 C; 2EOZ A; 5CFF E; 3HPS A; 3F7P A; 3C4B A; 2GPI A; 1PA7 A; 1HNZ E; 2LE2 A; 2EN4 A; 1I94 E; 1N33 E; 1A1I A; 3MHH C; 2PRT A; 2UUB E; 2WFN A; 1T4O A; 1PXY A; 1LLM C; 2EPX A; 1UHZ A; 1X3C A; 2EOF A; 1T39 A; 2B9D A; 2YSO A; 1MB8 A; 4F9A B; 1PJT A; 3FIG A; 2D86 A; 4N4R B; 4B7L A; 2JOX A; 2YRH A; 2JXP A; 4KWY A; 4LF6 E; 4WSP A; 2V86 A; 2DLQ A; 1ZU1 A; 4BBY A; 2EOX A; 2EM0 A; 2MDR A; 2LBS B; 2Q8U A; 4Q59 A; 2L3G A; 4ZYG A; 2EMZ A; 4WXD A; 3JAM C; 2ADR A; 4DR6 E; 4GKK E; 5DNY A; 4LTY A; 2YTF A; 5AAS A; 3JTZ A; 4Q35 B; 2DGC A; 1WYM A; 5KL4 A; 3HOR A; 1L4S A; 1SH6 A; 4DR1 E; 2WZO A; 1WYQ A; 4L5N C; 2DLK A; 2EPR A; 2NA2 A; 1XNR E; 2EOI A; 3HQ1 A; 4LVP A; 2WBU A; 2EQ1 A; 3VHT B; 4R2S A; 5TSE A; 1WYL A; 3EPK A; 4R2Q A; 2L3J A; 2EPA A; 5L0O A; 2ODR D; 3VYY A; 2YSP A; 4HTG A; 1XNQ E; 2JOB A; 2L92 A; 4LF4 E; 5BVR A; 2D87 A; 2EMH A; 4X64 E; 2F8B A; 2LUP B; 2EE7 A; 1MGT A; 1IBK E; 1BKR A; 2UUC E; 2EE8 A; 4BCA A; 2M9A A; 2K4V A; 2EJ4 A; 3CO1 A; 5AE3 A; 3JAL M; 2D88 A; 1HNX E; 2RTX A; 3AV0 A; 2ODR C; 3BBG A; 2EQ3 A; 2V89 A; 3TQM A; 2KON A; 5A6A A; 1P5S A; 4ZYH A; 2LUQ A; 2EMK A; 2N3G A; 5A69 A; 3REP B; 2EM3 A; 2CT1 A; 2EQ0 A; 4X62 E; 1F2I G; 2QJX A; 1DI2 A; 4KHP E; 2MKN A; 2V88 A; 2RS7 A; 1IBL E; 2N8X A; 2EMA A; 5ADZ A; 2D89 A; 3C4T A; 2UXB E; 4WPY A; 4JI7 E; 3JAK M; 4JI5 E; 1WYR A; 2VZC A; 1WXR A; 2FV4 B; 2B7T A; 1EKZ A; 4DKK A; 1MEY C; 2LRS A; 2B3T B; 3ADJ A; 3M99 B; 4JI6 E; 2EPO A; 2RPC A; 2V83 A; 4GKJ E; 4YHH E; 3LML A; 2LCE A; 3F6G A; 3T1Y E; 3HOP A; 1IQS A; 5A37 A; 5KL5 A; 1WYO A; 4DDP A; 4F6N A; 2VZI B; 2ENC A; 1IBM E; 2K3S A; 4LVR A; 2LTR A; 1AA2 A; 2EMB A; 2EOM A; 3K6Q A; 1A1K A; 4BHC A; 1J26 A; 1ZAA C; 2EWL A; 2EOH A; 5A2Q C; 2WA6 A; 2VF1 A; 2RSI A; 3J7A G; 3EQ1 A; 2MC5 A; 1G2D C; 2YRK A; 4BC7 A; 5A6K A; 4F2J C; 3OTO E; 2I13 A; 5AE2 A; 3FER A; 2EN8 A; 1GQE A; 1RMD A; 2LMZ A; 2EOY A; 2LVH A; 3ECR A; 5LMU E; 3KWR A; 1FKA E; 3I6X A; 2CTD A; 4EDM A; 1STU A; 1WHN A; 4F54 A; 4TXI A; 4O24 A; 2WDT A; 1DXX A; 2EOJ A; 2E5L E; 4R8O A; 4DR7 E; 1UJO A; 1RC7 A; 1IMU A; 2YTN A; 4AQY E; 1WKU A; 3AUZ A; 3ADL A; 3P1X A; 5LL6 R; 2CPN A; 2NUG A; 4M0V A; 2EMI A; 4HEI A; 2HC5 A; 4JI8 E; 2R8U A; 2V87 A; 2NUF A; 4LF5 E; 2K2R A; 1EUV A; 2HL8 A; 3EAY A; 2DIX A; 3J80 C; 4BC9 A; 2VE7 A; 4R2E A; 5IXM B; 4Q58 A; 1P47 A; 1XMO E; 2EM9 A; 2DK9 A; 3BID A; 1BBG A; 3H09 A; 5A6B A; 1AAY A; 4B3T E; 4LF9 E; 2E9K A; 1IQO A; 4TXK A; 2EQO A; 2EM7 A; 2YTQ A; 2YTI A; 1ZBQ A; 1TJT A; 2A25 A; 2EPP A; 2D85 A; 4MLQ A; 4M9V C; 2EMX A; 2YT4 A; 5BR8 E; 2L2M A; 1T38 A; 3BF2 A; 3THN A; 1A1F A; 2RQL A; 2EPZ A; 1AH5 A; 1YZ9 A; 2VQE E; 2JVA A; 3HXL A; 3MHS C; 1X6F A; 2YWQ A; 1YPN A; 2G7H A; 2YRM A; 2M7Q A; 2WCC 3; 3UK3 C; 5IV8 B; 1A1G A; 1DQ3 A; 2JP9 A; 2EM2 A; 2EL5 A; 2VRD A; 2VZD A; 2FTX B; 5KL3 A; 2YU8 A; 4EDL A; 2EPU A; 1YUI A; 4LF7 E; 2FGG A; 4LFA E; 2ELY A; 2DB2 A; 1V5K A; 2UXD E; 2IHR 1; 1WRJ A; 5A4B A; 4M2Z A; 2YRN A; 2EP3 A; 3ADG A; 4GEQ B; 2ELZ A; 2EPK X; 2L3C A; 5LLQ A; 4R2D A; 5KL2 A; 3HPZ A; 3QG5 C; 2BB8 A; 3MSW A; 5FLX C; 2EPM X; 1UEG A; 3KY9 A; 1WHQ A; 2F4V E; 2B7V A; 2EYI A; 2K7I A; 4O43 A; 4WX9 A; 3EPJ A; 1A1L A; 3IWB A; 2KHX A; 4DV2 E; 2YTO A; 1VKA A; 4JV5 E; 2JY9 A; 1SH5 A; 2EMF A; 4I8O A; 1X49 A; 5LMN E; 2GLI A; 5AC4 A; 1H67 A; 1A1J A; 2I9I A; 2JV9 A; 1DGC A; 5KL6 A; 2JYA A; 1UBD C; 1WYP A; 4K0K E; 1N3G A; 4YY3 E; 3DF6 A; 2WA7 A; 4F9B B; 2L33 A; 5J8E A; 4ZYE A; 2HGH A; 3C6K A; 1QU6 A; 1P2X A; 2RR8 A; 1YYO A; 2JPA A; 2HL9 A; 4RHB B; 4R2P A; 4TUI A; 4DR2 E; 2JR1 A; 4BHB A; 2EL4 A; 2EOS A; 1FJG E; 2D9H A; 3T1H E; 2MKD A; 3RMP A; 3LLH A; 2EN6 A; 4GZN C; 1ZR9 A; 1N36 E; 2EM6 A; 2V8Q B; 1RT8 A; 2EOE A; 4X8W A; 2ENH A; 1A1H A; 4OX9 E; 3VYX A; 2YPN A; 1TF6 A; 2M4I A; 2GHF A; 2DSY A; 5FMT A; 2YTE A; 3J81 C; 2HHH E; 1PDA A; 4IS1 C; 2L6M A; 4P7D A; 3KZY A; 4DV6 E; 2EN7 A; 1QAG A; 1UN6 B; 1QNT A; 4MLV A; 2H36 X; 2EN1 A; 1YUJ A; 4LU9 A; 2RSM A; 4R2A A; 4X66 E; 2L8T A; 1NEI A; 1GZ6 A; 1B69 A; 2J7J A; 2EMY A; 1AOA A; 2EPN A; 1YSA C; 1TF3 A; 2E1M A; 4DV3 E; 1Z1B A; 4M30 A; 2QJZ A; 1KJK A; 4DV4 E; 4FK5 C; 4B3M E; 5T6J A; 3J7Y p; 2DRP A; 1G2F C; 3JAR M; 2M1S A; 1X6H A; 1YYW A; 3EPH A; 1JK2 A; 4P78 A; 2YU5 A; 1X5W A; 2NUE A; 1T4N A; 1X6E A; 2DMI A; 2L2N A; 2EOR A; 1BBO A; 1PKP A; 1GTK A; 4BMJ A; 4F6M A; 2UU9 E; 3F6H A; 2WE6 A; 3KZZ A; 1WYN A; 1SFE A; 2EMG A; 1N32 E; 3IWC A; 2EOQ A; 4WYQ B; 1BHD A; 2EL6 A; 3HTX A; 2MC6 A; 4EDN A; 2VZG B; 2R0O A; 4DMI A; 2EN3 A; 4R2R A; 3EPL A; 1N34 E; 2EM8 A; 1J5E E; 1PJS A; 1T4L B; 4NHR A; 2V85 A; 2WA5 A; 2LT7 A; 2BBG A; 2EM4 A; 4DUY E; 1HNW E; 4WFT A; 4KZS A; 4NZV A; 2EM5 A; 2LO3 A; 4R2C A; 4B3S E; 4NXN E; 4J8Z A; 4BS9 A; 4DV1 E; 1BB8 A; 1UIL A; 2JWO A; 4JI0 E; 4L8N A; 1XMQ E; 2UUA E; 3ZOQ B; 3DJW A; 2WBT A; 4DR3 E; 1NCS A; 4Q28 A; 4IJD A; 5AE1 A; 3THO B; 5FMU A; 3HOC A; 4LFC E; 5AC5 A; 5F3W A; 5KL7 A; 2N3H A; 5A38 A; 1WJP A; 2EPC A; 3BGH A; 4WSG A; 4X9J A; 5IWA E; 2L2K B; 4JYA E; 2VQF E; 3KMW B; 2WBS A; 2MDG A; 5A36 A; 2KOU A; 3VP7 A; 4WXC A; 4DUZ E; 2E72 A; 4OOG C; 3IWD A; 2YTP A; 4O4K A; 3OML A; 2LJH A; 2YZT A; 4DV5 E; 4DV7 E; 1YYK A; 5IT9 C; 1X48 A; 3KMU B; 2EMC A; 1TN9 A; 2ZM6 E; 2YTJ A; 2ENA A; 2R76 A; 4DR4 E; 4JI1 E; 2IGP A; 2HJJ A; 1KYQ A; 2LV2 A; 2EYN A; 4JI3 E; 2LTS A; 2DMY A; 2EMW A; 1HR0 E; 2CSH A; 2R1F A; 1EH6 A; 4F9C B; #chains in the Genus database with same CATH homology 1O0W A; 1SR9 A; 4DV0 E; 4LFB E; 4DR5 E; 3ADI A; 2EZ6 A; 4R03 A; 4JI2 E; 1RQ0 A; 1ZBT A; 2RS6 A; 2UXC E; 1X47 A; 4NXM E; 4TUG A; 4B3R E; 4JI4 E; 4X65 E; 3JU0 A; 2HKP A; 4LF8 E; 3VK6 A; 2VE7 C; 5CFF E; 3HPS A; 3C4B A; 1HNZ E; 2LE2 A; 1I94 E; 1N33 E; 2UUB E; 1T4O A; 1UHZ A; 2B9D A; 4F9A B; 3FIG A; 2JOX A; 4LF6 E; 4WSP A; 2V86 A; 4BBY A; 2MDR A; 2LBS B; 3JAM C; 4DR6 E; 4GKK E; 5DNY A; 4LTY A; 5AAS A; 3JTZ A; 4DR1 E; 2WZO A; 4L5N C; 2NA2 A; 1XNR E; 3HQ1 A; 4LVP A; 2L3J A; 2ODR D; 3VYY A; 1XNQ E; 2JOB A; 2L92 A; 4LF4 E; 4X64 E; 2F8B A; 2LUP B; 1IBK E; 2UUC E; 4BCA A; 2K4V A; 5AE3 A; 1HNX E; 2RTX A; 3AV0 A; 2ODR C; 2V89 A; 2KON A; 2LUQ A; 2N3G A; 4X62 E; 1DI2 A; 4KHP E; 2V88 A; 2RS7 A; 1IBL E; 5ADZ A; 3C4T A; 2UXB E; 4WPY A; 4JI7 E; 4JI5 E; 1WXR A; 2FV4 B; 2B7T A; 1EKZ A; 4DKK A; 2LRS A; 2B3T B; 3ADJ A; 4JI6 E; 2V83 A; 4GKJ E; 4YHH E; 3LML A; 3T1Y E; 3F6G A; 4DDP A; 1IBM E; 4LVR A; 2LTR A; 3K6Q A; 1J26 A; 2EWL A; 5A2Q C; 2VF1 A; 3J7A G; 2MC5 A; 4BC7 A; 3OTO E; 5AE2 A; 1GQE A; 2LMZ A; 5LMU E; 3KWR A; 1FKA E; 1STU A; 1WHN A; 4F54 A; 2WDT A; 2E5L E; 4R8O A; 4DR7 E; 1RC7 A; 4AQY E; 3AUZ A; 3ADL A; 3P1X A; 5LL6 R; 2NUG A; 2CPN A; 4M0V A; 4JI8 E; 2V87 A; 2NUF A; 4LF5 E; 1EUV A; 2HL8 A; 3EAY A; 2DIX A; 3J80 C; 4BC9 A; 2VE7 A; 1XMO E; 3H09 A; 4B3T E; 4LF9 E; 2EQO A; 1ZBQ A; 2YT4 A; 5BR8 E; 2L2M A; 1YZ9 A; 2VQE E; 2JVA A; 3HXL A; 2G7H A; 2M7Q A; 1DQ3 A; 2FTX B; 4LF7 E; 2FGG A; 4LFA E; 2DB2 A; 2UXD E; 2IHR 1; 4M2Z A; 3ADG A; 4GEQ B; 2L3C A; 3HPZ A; 3MSW A; 5FLX C; 1WHQ A; 2F4V E; 2B7V A; 3IWB A; 2KHX A; 4DV2 E; 4JV5 E; 2JY9 A; 4I8O A; 1X49 A; 5LMN E; 4K0K E; 4YY3 E; 3DF6 A; 4F9B B; 2L33 A; 1QU6 A; 1YYO A; 2HL9 A; 4TUI A; 4DR2 E; 2JR1 A; 1FJG E; 3T1H E; 3RMP A; 3LLH A; 1N36 E; 2V8Q B; 3VYX A; 4X8W A; 4OX9 E; 2M4I A; 2HHH E; 2DSY A; 5FMT A; 3J81 C; 2L6M A; 4P7D A; 4DV6 E; 2H36 X; 4LU9 A; 2RSM A; 4X66 E; 2L8T A; 1GZ6 A; 2E1M A; 4DV3 E; 4M30 A; 4DV4 E; 4B3M E; 5T6J A; 3J7Y p; 2M1S A; 1YYW A; 4P78 A; 2NUE A; 1T4N A; 2L2N A; 1PKP A; 4BMJ A; 2UU9 E; 3F6H A; 2WE6 A; 1N32 E; 3IWC A; 4WYQ B; 3HTX A; 2MC6 A; 4DMI A; 1N34 E; 1J5E E; 1T4L B; 2V85 A; 4DUY E; 1HNW E; 4WFT A; 4KZS A; 4B3S E; 4NXN E; 4J8Z A; 4BS9 A; 4DV1 E; 1UIL A; 2JWO A; 4JI0 E; 4L8N A; 1XMQ E; 2UUA E; 3ZOQ B; 3DJW A; 4DR3 E; 4Q28 A; 5AE1 A; 5FMU A; 4LFC E; 5F3W A; 2N3H A; 5IWA E; 2L2K B; 4JYA E; 2VQF E; 2KOU A; 3VP7 A; 4DUZ E; 4OOG C; 3IWD A; 3OML A; 2LJH A; 2YZT A; 4DV5 E; 4DV7 E; 1YYK A; 5IT9 C; 1X48 A; 2ZM6 E; 4DR4 E; 4JI1 E; 2IGP A; 4JI3 E; 2LTS A; 2DMY A; 1HR0 E; 4F9C B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
