The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
42
|
sequence length |
176
|
structure length |
174
|
Chain Sequence |
AEVLNEDFENGIPASWKTIDADGDGNNWTTTPPPGGSSFAGHNSAICVSSASYINFEGPQNPDNYLVTPELSLPGGGTLTFWVCAQDANYASEHYAVYASSTGNDASNFANALLEEVLTAKTVVPEAIRGTRAQGTWYQKTVQLPAGTKYVAFRHFGCTDFFWINLDDVVITSG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
Lysine specific cysteine protease
|
| publication title |
The modular structure of haemagglutinin/adhesin regions in gingipains of Porphyromonas gingivalis.
pubmed doi rcsb |
| source organism |
Porphyromonas gingivalis
|
| molecule tags |
Cell invasion
|
| total genus |
42
|
| structure length |
174
|
| sequence length |
176
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
3.4.22.47: Gingipain K. |
| pdb deposition date | 2010-03-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF07675 | Cleaved_Adhesin | Cleaved Adhesin Domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls |
