The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
126
|
sequence length |
372
|
structure length |
372
|
Chain Sequence |
LQYTEISNISSDKINILGRTGKKRQPLPVFFNGGGVEVVVTGSELWIDLETDSDVNEMWVALEINGAFIARQMLLPGEHSLCLFRSMEKTTPKRVRLYRELQAMNDDPKVKLLFKGFKHDGEFQNVPVYSRKLEFIGDSITSGEGSYGAFDDVDWIPMYMSASANYATMTAKALNADYHLVSQGGWGVFCGWDNDVRHNLPSVYEKVCGLAKGEMNEELGAQEEYDFASWQPDAIIVNLGTNDVTSFNQPEFLNPDDGKTYKMRTNTDGTRNREDELKIVSAIIDFLTMLRKHNPNAQIIWSYGMLGSDLNLVITEGINKYKENAGDEKVSFFQLPNTTMENFGSHMAPGPKSHQNAAKELVDYLRNKLGWF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
Acetyl-xylan esterase Est2A
|
| publication title |
Structure and function of an acetyl xylan esterase (Est2A) from the rumen bacterium Butyrivibrio proteoclasticus.
pubmed doi rcsb |
| source organism |
Butyrivibrio proteoclasticus
|
| molecule tags |
Hydrolase
|
| total genus |
126
|
| structure length |
372
|
| sequence length |
372
|
| chains with identical sequence |
B, C, D, E, F, G, H
|
| ec nomenclature | |
| pdb deposition date | 2012-01-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF13472 | Lipase_GDSL_2 | GDSL-like Lipase/Acylhydrolase family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | SGNH hydrolase |
