The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
299
|
sequence length |
968
|
structure length |
968
|
Chain Sequence |
b'LLQKYVTWDDKSLFINGERIMIFSGEFHPFRLPVKELQLDIFQKVKALGFNCVSFYVDWALVEGKPGEYRADGIFDLEPFFDAASEAGIYLLARPGPYINAESSGGGFPGWLQRVNGTLRSSDKAYLDATDNYVSHVAATIAKYQITNGGPIILYQPENEYTSGCCGVEFPDPVYMQYVEDQARNAGVVIPLINNDASASGNNAPGTGKGAVDIYGHDSYPLGFDCANPTVWPSGDLPTNFRTLHLEQSPTTPYAIVQFQGGSYDPWGGPGFAACSELLNNEFERVFYKNDFSFQIAIMNLYMIFGGTNWGNLGYPNGYTSYDYGSAVTESRNITREKYSELKLLGNFAKVSPGYLTASPGNLTTSGYADTTDLTVTPLLGNSTGSFFVVRHSDYSSEESTSYKLRLPTSAGSVTIPQLGGTLTLNGRDSKIHVTDYNVSGTNIIYSTAEVFTWKKFADGKVLVLYGGAGEHHELAISTKSNVTVIEGSESGISSKQTSSSVVVGWDVSTTRRIIQVGDLKILLLDRNSAYNYWVPQLATDGTSPGFSTPEKVASSIIVKAGYLVRTAYLKGSGLYLTADFNATTSVEVIGVPSTAKNLFINGDKTSHTVDKNGIWSATVDYNAPDISLPSLKDLDWKYVDTLPEIQSSYDDSLWPAADLKQTKNTLRSLTTPTSLYSSDYGFHTGYLLYRGHFTATGNESTFAIDTQGGSAFGSSVWLNGTYLGSWTGLYANSDYNATYNLPQLQAGKTYVITVVIDNMGLEENWTVGEDLMKTPRGILNFLLAGRPSSAISWKLTGNLGGEDYEDKVRGPLNEGGLYAERQGFHQPEPPSQNWKSSSPLEGLSEAGIGFYSASFDLDLPKGWDVPLFLNIGNSTTPSPYRVQVYVNGYQYAKYISNIGPQTSFPVPEGILNYRGTNWLAVTLWALDSAGGKLESLELSYTTPVLTALGEVESVDQPKYKKRKGAYH'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
Probable beta-galactosidase A
|
| publication title |
Structural features of Aspergillus niger beta-galactosidase define its activity against glycoside linkages.
pubmed doi rcsb |
| source organism |
Aspergillus niger cbs 513.88
|
| molecule tags |
Hydrolase
|
| total genus |
299
|
| structure length |
968
|
| sequence length |
968
|
| ec nomenclature |
ec
3.2.1.23: Beta-galactosidase. |
| pdb deposition date | 2016-02-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01301 | Glyco_hydro_35 | Glycosyl hydrolases family 35 |
| A | PF10435 | BetaGal_dom2 | Beta-galactosidase, domain 2 |
| A | PF13363 | BetaGal_dom3 | Beta-galactosidase, domain 3 |
| A | PF13364 | BetaGal_dom4_5 | Beta-galactosidase jelly roll domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | ||
| Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | ||
| Mainly Beta | Sandwich | beta-galactosidase, domain 3 | Beta-galactosidase, domain 3 | ||
| Mainly Beta | 3-layer Sandwich | beta-galactosidase, domain 2 | Beta-galactosidase, domain 2 | ||
| Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases |
