The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
64
|
sequence length |
288
|
structure length |
288
|
Chain Sequence |
MFIQEPKKLIDTGEIGNASTGDILFDGGNKINSDFNAIYNAFGDQRKMAVANGTGADGQIIHATGYYQKHSITEYATPVKVGTRHDIDTSTVGVKVIIERGELGDCVEFINSNGSISVTNPLTIQAIDSIKGVSGNLVVTSPYSKVTLRCISSDNSTSVWNYSIESMFGQKESPAEGTWNISTSGSVDIPLFHRTEYNMAKLLVTCQSVDGRKIKTAEINILVDTVNSEVISSEYAVMRVGNETEEDEIANIAFSIKENYVTATISSSTVGMRAAVKVIATQKIGVAQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The Structure of Bacteriophage T4 Gene Product 9: The Trigger for Tail Contraction
pubmed doi rcsb |
| source organism |
Enterobacteria phage t4
|
| molecule tags |
Viral protein
|
| molecule keywords |
Baseplate structural protein Gp9
|
| total genus |
64
|
| structure length |
288
|
| sequence length |
288
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2004-01-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF07880 | T4_gp9_10 | Bacteriophage T4 gp9/10-like protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | Bacteriophage t4 gene product 9 (gp9) | ||
| Mainly Beta | Sandwich | Immunoglobulin-like | 4-oxalocrotonate tautomerase-like | ||
| Mainly Beta | Sandwich | Jelly Rolls | gp9 |
