The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
44
|
sequence length |
192
|
structure length |
192
|
Chain Sequence |
SLAPLREFITGLSALLDEQPGEARILREGGALLARLVARDDWLPDAFAQPHPEYYQQMLLHCDSAERFSIVSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDRVSISIHVYGANIGGVRRSVYTEAGERKPFISGYSNPYLPNPWDRSK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Oxidoreductase
|
| source organism |
Ralstonia eutropha jmp134
|
| publication title |
Structures of Arg- and Gln-type bacterial cysteine dioxygenase homologs.
pubmed doi rcsb |
| molecule keywords |
Cysteine dioxygenase type I
|
| total genus |
44
|
| structure length |
192
|
| sequence length |
192
|
| ec nomenclature | |
| pdb deposition date | 2014-06-15 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05995 | CDO_I | Cysteine dioxygenase type I |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | ATP synthase delta/epsilon subunit, C-terminal domain | ||
| Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls |
