The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
277
|
sequence length |
822
|
structure length |
822
|
Chain Sequence |
QFVIFTPAGNHFPLVANGVPCPIYIDSSEDKGVMIAAGNLQQDILQVCGKKPELLTSTSSKRCIIAGTYGTPFIKKLMSAGKIDKKELDGKNEKYILQVIANPCEGIDEAVVIIGSDRRGTIYGIYELSEQMGVSPWYWWADVPVMKQANVYIKPGQYSDGEPAVTYRGIFLNDEAPCLTRWVKHTYGTNYGDHRFYARVCELILRLKGNFLWPAMWSWAFYADDPQNSKTASEMGVIIGTSHHEPMARNHQEWSRKRKEYGAWDYTTNQKVIDQFFREGIERMQGTEDIVTIGMRGDGDAAMSKSTNVKLLENVVKNQRKIIEEVTKRPAKETPQVWALYKEVLDYYDKGMRVPDDVIMLLCDDNWGNVCRLPNAKERKHPGGWGMYYHVDYVGAPRNSKWLNVTPIQNMWEQLQLTYDYGVEKLWILNVGDLKPMEYPITLFMDMAWNPKQFNVSNLLDHPRRFCAQQFGEDQADEAMRILNLYSKYNGRVTGEMLDRNTYNLETGEWKQVSDEYLKLEAEALRQYISLKPEYKDAYKQLILFPVQAMANLYEMYYAQAMNHKLYKENNPQANEWADKVEQAFARDKALSDDYNNIMSGGKWKNMMIQKHIGYTSWNDNFPADTLPKIYRIENPEKAVGGYVFTGQDGYIAIEAEHYYSAKAAPDTEWTVIPYMGRTLSGMALMPYTQPTDGASISYKIKLPKGIDKVTVHVIVKSTLAFHDRKGHEYSIGFEGGKDQTINFNHNLNELPENVYSIYYPTVARRIVEKKAKLNVPNTSDGMQTITFKPLDPGIVLEKLVVDYGGYKKSYLFMNESKSKRE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
ALPHA-GLUCURONIDASE GH115
|
| publication title |
Evidence that Gh115 Alpha-Glucuronidase Activity is Dependent on Conformational Flexibility
pubmed doi rcsb |
| source organism |
Bacteroides ovatus
|
| molecule tags |
Hydrolase
|
| total genus |
277
|
| structure length |
822
|
| sequence length |
822
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2013-10-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF15979 | Glyco_hydro_115 | Glycosyl hydrolase family 115 |
| A | PF17829 | GH115_C | Gylcosyl hydrolase family 115 C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase; Chain G, domain 1 | Methane Monooxygenase Hydroxylase; Chain G, domain 1 | ||
| Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | ||
| Alpha Beta | Alpha-Beta Barrel | TIM Barrel | TIM Barrel | ||
| Alpha Beta | 2-Layer Sandwich | Chitobiase; domain 2 | Chitobiase/beta-hexosaminidase domain 2-like |
