The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
102
|
sequence length |
307
|
structure length |
307
|
Chain Sequence |
MNVVIVRYGEIGTKSRQTRSWFEKILMNNIREALVTEEVPYKEIFSRHGRIIVKTNSPKEAANVLVRVFGIVSISPAMEVEASLEKINRTALLMFRKKAKEVGKERPKFRVTARRITKEFPLDSLEIQAKVGEYILNNENCEVDLKNYDIEIGIEIMQGKAYIYTEKIKGWGGLPIGTEGRMIGILHDELSALAIFLMMKRGVEVIPVYIGKDDKNLEKVRSLWNLLKRYSYGSKGFLVVAESFDRVLKLIRDFGVKGVIKGLRPNDLNSEVSEITEDFKMFPVPVYYPLIALPEEYIKSVKERLGL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Purification, crystallization and preliminary crystallographic analysis of the putative thiamine-biosynthesis protein PH1313 from Pyrococcus horikoshii OT3
pubmed doi rcsb |
| source organism |
Pyrococcus horikoshii
|
| molecule tags |
Structural genomics, unknown function
|
| molecule keywords |
hypothetical protein PH1313
|
| total genus |
102
|
| structure length |
307
|
| sequence length |
307
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2004-02-27 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02568 | ThiI | Thiamine biosynthesis protein (ThiI) |
| A | PF02926 | THUMP | THUMP domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | THUMP domain-like | ||
| Alpha Beta | 2-Layer Sandwich | THUMP fold | THUMP superfamily | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs |
