The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
70
|
sequence length |
350
|
structure length |
341
|
Chain Sequence |
KKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPEEVVLDATSPSERLILSPKAKLHVNNGKDVNKGDLIAEEPPIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQGLPLSKNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAEARKFFAKVSGRVEVVDYSTRKEIRIYKTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLEEYELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEVEKI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
TRANSCRIPTION ANTITERMINATION PROTEIN NUSG
|
| publication title |
An Autoinhibited State in the Structure of Thermotoga Maritima Nusg.
pubmed doi rcsb |
| source organism |
Thermotoga maritima
|
| molecule tags |
Transcription
|
| total genus |
70
|
| structure length |
341
|
| sequence length |
350
|
| ec nomenclature | |
| pdb deposition date | 2010-06-14 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00467 | KOW | KOW motif |
| A | PF02357 | NusG | Transcription termination factor nusG |
| A | PF18298 | NusG_add | NusG additional domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | SH3 type barrels. | SH3 type barrels. | ||
| Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | NusG, N-terminal domain |
