The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
63
|
Knots found |
|
sequence length |
236
|
structure length |
236
|
Chain Sequence |
GKRVLIVDDATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKKHGVNVRLEGLLEHHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
A beta alpha-barrel built by the combination of fragments from different folds.
pubmed doi rcsb |
molecule tags |
De novo protein
|
source organism |
Thermotoga maritima
|
molecule keywords |
beta/alpha-barrel protein based on 1THF and 1TMY
|
total genus |
63
|
structure length |
236
|
sequence length |
236
|
other databases |
KnotProt 2.0: K +31
|
ec nomenclature |
ec
4.3.2.10: Imidazole glycerol-phosphate synthase. |
pdb deposition date | 2008-04-22 |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I |