The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
133
|
sequence length |
373
|
structure length |
372
|
Chain Sequence |
SAPDWIAHPDTPYLLIDEAKLKSNINYLKQRVESLGSHLRPHLTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYTDLLYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQDFSVFIEIDSDDHRGGIKPSDSKLLTIAKTLGEHFTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAGIHCAITSVGSTPTAHFGEDFSDISEVRAGVYTTFDLVMKNIGVCDFSHIAMSVVTTVIGHNKEKNWLLTDSGWMALSRDSGTAGQNRDFGYGQVCKIDGSVLDGLCVNSTSQEHGVIELSDAYQLEDFPVGHQLRIMPNHACATAAMHPVYHVLMSDGSHNTWQRITGW
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
Predicted amino acid aldolase or racemase
|
| publication title |
Crystal structure of PROTEIN OF UNKNOWN FUNCTION (YP_156143.1) from Idiomarina loihiensis L2TR at 1.50 A resolution
rcsb |
| source organism |
Idiomarina loihiensis
|
| molecule tags |
Isomerase
|
| total genus |
133
|
| structure length |
372
|
| sequence length |
373
|
| ec nomenclature | |
| pdb deposition date | 2010-01-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01168 | Ala_racemase_N | Alanine racemase, N-terminal domain |
| A | PF14031 | D-ser_dehydrat | Putative serine dehydratase domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Lyase, Ornithine Decarboxylase; Chain A, domain 1 | Lyase, Ornithine Decarboxylase; Chain A, domain 1 | ||
| Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Alanine racemase |
