The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
138
|
sequence length |
418
|
structure length |
383
|
Chain Sequence |
FEQKIESLKKEKDDQLSEGNQKEHFRQGQAEVIAYYPLQGEKVISSVRELINQDVKDKLESKDNLVFYYTEQEESGLKGVVNRNVTKQIYDIEETEKTSLGKVHLTEDGQPFTLDQLFSDASKAKEQLIKELTSFDLSAWNFDYKDSQIILYEIALPVSAFFDVIQSSYLLEKDAALYQSYFDKKHQKVVALTFNDGPNPATTPQVLETLAKYDIKATFFVLGKNVSGNEDLVKRIKSEGHVVGNHSWSHPILSQLSLDEAKKQITDTEDVLTKVLGSSSKLMRPPYGAITDDIRNSLDLSFIMWDVDSLDWKSKNEASILTEIQHQVANGSIVLMHDIHSPTVNALPRVIEYLKNQGYTFVTIPEMLNTRLKAHELYYSRDE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
molecule keywords |
PEPTIDOGLYCAN GLCNAC DEACETYLASE
|
publication title |
Structure and metal-dependent mechanism of peptidoglycan deacetylase, a streptococcal virulence factor.
pubmed doi rcsb |
source organism |
Streptococcus pneumoniae
|
molecule tags |
Hydrolase
|
total genus |
138
|
structure length |
383
|
sequence length |
418
|
ec nomenclature |
ec
3.5.1.104: Peptidoglycan-N-acetylglucosamine deacetylase. |
pdb deposition date | 2005-09-15 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF01522 | Polysacc_deac_1 | Polysaccharide deacetylase |
A | PF18627 | PgdA_N | Peptidoglycan GlcNAc deacetylase N-terminal domain |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycoside hydrolase/deacetylase | ||
Alpha Beta | 2-Layer Sandwich | Heat Shock Protein 90 | Heat Shock Protein 90 | ||
Alpha Beta | Alpha-Beta Complex | Actin; Chain A, domain 4 | Actin; Chain A, domain 4 |