The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
126
|
sequence length |
313
|
structure length |
313
|
Chain Sequence |
QGHMFFTDWEGPWILTDFALELCMAVFNNARFFSNLSEYDDYLAYEVRREGYEAGYTLKLLTPFLAAAGVKNRDVERIAELSAKFVPDAEKAMATLQERWTPVVISTSYTQYLRRTASMIGVRGELHGTEVDFDSIAVPEGLREELLSIIDVIASLSGEELFRKLDELFSRSEVRKIVESVKAVGAGEKAKIMRGYCESKGIDFPVVVGDSISDYKMFEAARGLGGVAIAFNGNEYALKHADVVIISPTAMSEAKVIELFMERKERAFEVLSAVSIPETEIYIMENSDFGEVLEKSKRMRVRLRGLAGELGGS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
hypothetical protein AF1437
|
| publication title |
Structure of gene product AF1437 from Archaeoglobus fulgidus
rcsb |
| source organism |
Archaeoglobus fulgidus
|
| molecule tags |
Structural genomics, unknown function
|
| total genus |
126
|
| structure length |
313
|
| sequence length |
313
|
| ec nomenclature | |
| pdb deposition date | 2004-12-10 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | AF1437-like domain fold | AF1437-like domain superfamily | ||
| Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | AF1437-like | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HAD superfamily/HAD-like |
