The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
22
|
sequence length |
130
|
structure length |
128
|
Chain Sequence |
MPGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAIMGDMVQIMDLQTYETLELPIPEGIEGLEPGGEVEYIEAVGQYKITRVIG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structures of eukaryotic translation initiation factor 5A from Methanococcus jannaschii at 1.8 A resolution.
pubmed doi rcsb |
| source organism |
Methanocaldococcus jannaschii
|
| molecule tags |
Initiation factor
|
| molecule keywords |
EUKARYOTIC TRANSLATION INITIATION FACTOR 5A
|
| total genus |
22
|
| structure length |
128
|
| sequence length |
130
|
| ec nomenclature | |
| pdb deposition date | 1998-07-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01287 | eIF-5a | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold |
| A | PF08207 | EFP_N | Elongation factor P (EF-P) KOW-like domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | SH3 type barrels. | SH3 type barrels. | ||
| Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins |
