The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
154
|
sequence length |
523
|
structure length |
502
|
Chain Sequence |
TSEIILQERNSSLPRVWSKKTFTDATDFLGCSYAVENGTSIIGDFANAKYPVVNMKKLLERYPSYINPKELRTTETKALSYSDFDRLEKNKTFTKTVKSGFSLNLGPFKFGRQKTIKETFVHNTDDSEKVVHGELSIEVVNGMLNLQTAPSALRKIAADYLDELFVDALYNSSMVELMQSYGEFVLTGYYTGGRASALFYGVDTNSIQFDSKEKDMDVAINASYEWKNKKPTGNLSIGTKRENSETITNKFSALSYSIKTLGGAYGYSISTPPYDITNYSIDLTPWLQSLNDPKTHTMIDLQDGGLYPISDFILEENFKQRYNDTHMDFQYQESLEEPYIEIIKMYIRKSNSGEKLYDIVPVLNTRQGDKLIFSNPDAASQSDEELKANSIPATFLTKSNAIKDEKSKYYQLKIKADPNKTINPIIQLSFQINNVDEKGMYKFKNANTNIWYIYNPTSMYCFAYYDDDYIPDAYGILDWVNGIPIKAVTMTTLYQRYKIYGL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
Putative cell invasion protein with MAC/Perforin domain
|
| publication title |
Structure of a membrane-attack complex/perforin (MACPF) family protein from the human gut symbiont Bacteroides thetaiotaomicron.
pubmed doi rcsb |
| source organism |
Bacteroides thetaiotaomicron vpi-5482
|
| molecule tags |
Cell invasion
|
| total genus |
154
|
| structure length |
502
|
| sequence length |
523
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2009-11-04 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | ||
| Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase; domain 5 | Nucleotidyltransferase; domain 5 |
