The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
173
|
sequence length |
588
|
structure length |
588
|
Chain Sequence |
GMQIGKIIKVSGPLVMAENMSEASIQDMCLVGDLGVIGEIIEMRQDVASIQVYEETSGIGPGEPVRSTGEALSVELGPGIISQMFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFEATIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKIESGSFTIDDPICVIETEQGLKELTMMQKWPVRRGRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSDVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYSLYSTEVGRYMDQILQQDWSDMVTEGMRILQEEEQLNEIVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNMLKVILTFGKEARKALSLGAYFNEIMEGTVAVRERISRSKYIPEEELAKISSINEEIKETIQLIVSE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
pubmed doi rcsb |
| source organism |
Enterococcus hirae
|
| molecule tags |
Hydrolase
|
| molecule keywords |
V-type sodium ATPase catalytic subunit A
|
| total genus |
173
|
| structure length |
588
|
| sequence length |
588
|
| chains with identical sequence |
B, C
|
| ec nomenclature |
ec
7.2.2.1: Na(+)-transporting two-sector ATPase. |
| pdb deposition date | 2012-04-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00006 | ATP-synt_ab | ATP synthase alpha/beta family, nucleotide-binding domain |
| A | PF02874 | ATP-synt_ab_N | ATP synthase alpha/beta family, beta-barrel domain |
| A | PF16886 | ATP-synt_ab_Xtn | ATPsynthase alpha/beta subunit N-term extension |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 | Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | ||
| Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases |
