The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
178
|
Knots found |
|
sequence length |
537
|
structure length |
519
|
Chain Sequence |
MDPMICLGLEGTAEKTGVGIVTSDGEVLFNKTIMYKPPKQGINPREAADHHAETFPKLIKEAFEVVDKNEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIGKLTTEAEDPLTLYVSGGNTQVIAYVSKKYRVFGETLDIAVGNCLDQFARYVNLPHPGGPYIEELARKGKKLVDLPYTVKGMDIAFSGLLTAAMRAYDAGERLEDICYSLQEYAFSMLTEITERALAHTNKGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPPKEFCGDNGAMIAWLGLLMHKNGRWMSLDETKIIPNYRTDMVEVNWIAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMMSYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDKDLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Atomic structure of the KEOPS complex: an ancient protein kinase-containing molecular machine.
pubmed doi rcsb |
molecule tags |
Hydrolase
|
source organism |
Methanocaldococcus jannaschii
|
molecule keywords |
O-sialoglycoprotein endopeptidase/protein kinase
|
total genus |
178
|
structure length |
519
|
sequence length |
537
|
chains with identical sequence |
B
|
other databases |
KnotProt 2.0: S +31
|
ec nomenclature |
ec
2.3.1.234: N(6)-L-threonylcarbamoyladenine synthase. |
pdb deposition date | 2008-09-25 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF00814 | Peptidase_M22 | Glycoprotease family |
A | PF01163 | RIO1 | RIO1 family |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Orthogonal Bundle | Transferase(Phosphotransferase); domain 1 | Transferase(Phosphotransferase) domain 1 | ||
Alpha Beta | 2-Layer Sandwich | Phosphorylase Kinase; domain 1 | Phosphorylase Kinase; domain 1 | ||
Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase; domain 5 | Nucleotidyltransferase; domain 5 | ||
Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase; domain 5 | Nucleotidyltransferase; domain 5 |