The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
133
|
sequence length |
445
|
structure length |
426
|
Chain Sequence |
NLYFQSNSQYPDFAFEINQNEFLAAGVREVHAVVTLTATASENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVGRLHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESETPADLARAIQSSIGNFTADCRGIGEDWEPKELRKIADALLGTVGIIRDPATLAEDFREMTAKSMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYPTGAWGAESREYHICVEVEPGNIGQEKLAGRVQLVAKDAGGATLLGEGKIRAVWTEDTDLSTRINGRVAHYTGQAEMAAAIQEGLDAQAAGDLDTATARLGRAMDLAVESGHEDTVKMLRKVTEVDPATSKVRAKAKVDKGDAMELDVVSTKTVRA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
von Willebrand factor type A
|
| publication title |
von Willebrand factor type A from Catenulispora acidiphila
rcsb |
| source organism |
Catenulispora acidiphila
|
| molecule tags |
Blood clotting
|
| total genus |
133
|
| structure length |
426
|
| sequence length |
445
|
| ec nomenclature | |
| pdb deposition date | 2012-07-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF13768 | VWA_3 | von Willebrand factor type A domain |
| A | PF18571 | VWA_3_C | von Willebrand factor type A C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Four Helix Bundle (Hemerythrin (Met), subunit A) | ||
| Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulin-like | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | von Willebrand factor, type A domain |
