The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
62
|
sequence length |
287
|
structure length |
271
|
Chain Sequence |
ISVEKSIQEQKLNGYGVGSLIKFPVSSTAPTLDAKSFYKYFQLRDTLDDRLTAVTATEVSLEGTTLDPTDYKVDTKGQTVTVTFTAEGLKRIKAAPGKKVSAVFQGKVTEARNGAITNRAQVISDTVYAEQPPTPEEPPANPENPPTSNEVTSRWGDLLIKKVGLQGAQFQLYKAKNAYAGTCTKDKEGDPIAINGETTLTTDAQGAINVKGLFISDSIDGANRDNQKDATARCYVLVETKAPAGYVLPAGDGAVTPVKIEVNVTIENTKQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
Fimbrial structural subunit
|
| publication title |
Two autonomous structural modules in the fimbrial shaft adhesin FimA mediate Actinomyces interactions with streptococci and host cells during oral biofilm development.
pubmed doi rcsb |
| source organism |
Actinomyces naeslundii
|
| molecule tags |
Cell adhesion
|
| total genus |
62
|
| structure length |
271
|
| sequence length |
287
|
| ec nomenclature | |
| pdb deposition date | 2011-01-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF17802 | SpaA | Prealbumin-like fold domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | ||
| Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulin-like |
