The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
163
|
sequence length |
573
|
structure length |
531
|
Chain Sequence |
SAVVHPGELDEYYGFWSGGHSGEVRILGIPSMRELMRIPVFNIDSATGWGITNESKRIKGDSAHLMTGDSHHPHMSMTDGSYNGKYVFINDKANSRVARIRCDVMKTDKMITIPNVQAIHGLRVQKVPYTKYVICNGEFRSLFNVIDAEKMEVAFQVMVDGNLDNTDADYDGKYFFSTCYNRDHVVVFSLERCLAALKAGKFTNYNGNKVPVLDGRKGSDLTRYIPVPKSPHGINTAPDGKYFVANGKLSPTVSVVEIARLDDVFSGKIQPRDAIVAEPELGLGPLHTAFDNKGNAFTTLFLDSQIAKWNIQDAIKAYNGEKVNYLRQKLDVHYQPGHNHTSQGETRDTDGKWLVVLCKFSKDRFLPVGPLRPENDQLIDISGDEMKLVHDGPTFAEPHDCMIVHRSKVKPQKLWTRDDPMFADTVAMAKQDGVTLEMDNKVIRDGNKVRVYMTSIANFGMNEFKVKLGDEVTVVVTNLDQVEDVTHGFCMTNHGVQMEVAPQATASVTFIANKPGVQWYYCNWRGRMLVE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
molecule tags |
Oxidoreductase
|
source organism |
Shewanella denitrificans (strain os217 / atcc baa-1090 / dsm 15013)
|
publication title |
Role of Calcium in Secondary Structure Stabilization during Maturation of Nitrous Oxide Reductase.
pubmed doi rcsb |
molecule keywords |
Nitrous-oxide reductase
|
total genus |
163
|
structure length |
531
|
sequence length |
573
|
chains with identical sequence |
B
|
ec nomenclature |
ec
1.7.2.4: Nitrous-oxide reductase. |
pdb deposition date | 2016-02-15 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF18764 | nos_propeller | Nitrous oxide reductase propeller repeat |
A | PF18793 | nos_propeller_2 | Nitrous oxide reductase propeller repeat 2 |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Beta | Sandwich | Immunoglobulin-like | Cupredoxins - blue copper proteins | ||
Mainly Beta | 7 Propeller | Methylamine Dehydrogenase; Chain H | YVTN repeat-like/Quinoprotein amine dehydrogenase |