The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
116
|
sequence length |
347
|
structure length |
336
|
Chain Sequence |
b'DVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAGKVALLSGGGSGNEPMHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKLNNQGHSIGIALGACLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFDTLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLTTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDAPVHTPALNWGK'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural and mechanistic insight into covalent substrate binding by Escherichia coli dihydroxyacetone kinase.
pubmed doi rcsb |
| molecule keywords |
PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-bind
|
| source organism |
Escherichia coli
|
| molecule tags |
Transferase
|
| total genus |
116
|
| structure length |
336
|
| sequence length |
347
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
2.7.1.121: Phosphoenolpyruvate--glycerone phosphotransferase. |
| pdb deposition date | 2010-11-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02733 | Dak1 | Dak1 domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Hypothetical Protein Tm841; Chain: A;domain 3 | Dihydroxyacetone kinase; domain 2 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Dihydroxyacetone kinase; domain 1 |
