The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
95
|
sequence length |
288
|
structure length |
288
|
Chain Sequence |
MHEIVDKNGKKVQKNNLNDEIKIIFTDLDGTLLNSENKVSEQNLESLIRAQEKGIKVVIATGRSIFSVENVIGEHVKKNRISLLPGIYMNGCVTFDEKGSRVIDRIMNNDLKMEIHEFSKQINISKYAIWFCLEKTYCFEINDCIREYMEVEALNPDVIEDNMLEGLTVYKVLFSLPENILENTLKLCREKFSHRINVANTFQSYVELFHQHTNKFEGVKEICKYYNISLNNALAMGDGENDIEMLSGLTHSVGVHNASEKVKNSAAYVGPSNNEHAISHVLKTFCDI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
A sugar phosphatase regulates the methylerythritol phosphate (MEP) pathway in malaria parasites.
pubmed doi rcsb |
molecule tags |
Hydrolase
|
source organism |
Plasmodium falciparum
|
molecule keywords |
Haloacid dehalogenase-like hydrolase
|
total genus |
95
|
structure length |
288
|
sequence length |
288
|
chains with identical sequence |
B
|
ec nomenclature | |
pdb deposition date | 2014-06-03 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF08282 | Hydrolase_3 | haloacid dehalogenase-like hydrolase |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Alpha Beta | 2-Layer Sandwich | Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 | Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 | ||
Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HAD superfamily/HAD-like |