The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
107
|
sequence length |
272
|
structure length |
272
|
Chain Sequence |
RNLMIVDGTNLGFRFKHNNSKKPFASSYVSTIQSLAKSYSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTKGDWDTLLTDKVSRFSFTTRREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQNLNASEELLFRNLILVDLPTYCVDAIAAVGQDVLDKFTKDILEIAEQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Direct observation of DNA threading in flap endonuclease complexes.
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Escherichia phage t5
|
| molecule keywords |
DNA (5'-D(*AP*AP*AP*AP*GP*CP*GP*TP*AP*CP*GP*C)-3')
|
| total genus |
107
|
| structure length |
272
|
| sequence length |
272
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
3.1.11.3: Exodeoxyribonuclease (lambda-induced). |
| pdb deposition date | 2016-01-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01367 | 5_3_exonuc | 5'-3' exonuclease, C-terminal SAM fold |
| A | PF02739 | 5_3_exonuc_N | 5'-3' exonuclease, N-terminal resolvase-like domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | DNA polymerase; domain 1 | 5' to 3' exonuclease, C-terminal subdomain | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease |
