The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
131
|
sequence length |
501
|
structure length |
493
|
Chain Sequence |
GRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVHFEESSKLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVDEFKELVYPPDY
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
DNA (5'-D(*GP*TP*TP*TP*TP*TP*AP*GP*TP*TP*TP*AP*TP*TP*GP*GP*G
|
| publication title |
Structure of the Ku heterodimer bound to DNA and its implications for double-strand break repair.
pubmed doi rcsb |
| source organism |
Homo sapiens
|
| molecule tags |
Dna binding protein/dna
|
| total genus |
131
|
| structure length |
493
|
| sequence length |
501
|
| ec nomenclature | |
| pdb deposition date | 2001-06-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02037 | SAP | SAP domain |
| A | PF02735 | Ku | Ku70/Ku80 beta-barrel domain |
| A | PF03730 | Ku_C | Ku70/Ku80 C-terminal arm |
| A | PF03731 | Ku_N | Ku70/Ku80 N-terminal alpha/beta domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Ku70; Chain: A; domain 4 | Ku70; Chain: A; domain 4 | ||
| Mainly Beta | Beta Barrel | Ku70; Chain: A; Domain 2 | Ku70; Chain: A; Domain 2 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | von Willebrand factor, type A domain | ||
| Few Secondary Structures | Irregular | Ku70, bridge and pillars | Ku70, bridge and pillars |
