The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
105
|
sequence length |
328
|
structure length |
328
|
Chain Sequence |
MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKPTFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQWNEPAFTVQASGRQCQLHPQAPVMLKVSKNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLAYEIAKTIKSALEICK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural origins of DNA target selection and nucleobase extrusion by a DNA Cytosine methyltransferase.
pubmed doi rcsb |
| molecule tags |
Transferase/dna
|
| source organism |
Haemophilus aegyptius
|
| molecule keywords |
Modification methylase HaeIII
|
| total genus |
105
|
| structure length |
328
|
| sequence length |
328
|
| chains with identical sequence |
B, Y
|
| ec nomenclature |
ec
2.1.1.37: DNA (cytosine-5-)-methyltransferase. |
| pdb deposition date | 2011-10-24 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00145 | DNA_methylase | C-5 cytosine-specific DNA methylase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | ||
| Alpha Beta | Alpha-Beta Complex | DNA Methylase; Chain A, domain 2 | DNA Methylase, subunit A, domain 2 |
