The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
131
|
sequence length |
363
|
structure length |
357
|
Chain Sequence |
MARAFGGPNKYIQRAGEIDKLAAYLAPLGKRALVLIDRVLFDALSERISLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAIDTGARIVIAPTIASTDAPCSAIAVRYTEHGVYEEALRLPRNPDAVVVDSALVAAAPARFLVAGIGDALSTWFEARSNIESRTDNYVAGGFPATEAGMAIARHCQDVLTRDAVKAKIAVEAGLLTPAVENIIEANTLLSGLGFENCGCSAAHGIHDGLTVLEEVHGYFHGEKVAFGTLCLLMLENRDRAEIEAMIRFCRSVGLPTKLADLGIVDDVPAKIGRVAEAACRPGNIIYATPVTITVPAVRDAILALDAFSRSI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of a probable glycerol dehydrogenase from Sinorhizobium meliloti 1021
rcsb |
| source organism |
Sinorhizobium meliloti
|
| molecule tags |
Oxidoreductase
|
| molecule keywords |
Probable glycerol dehydrogenase
|
| total genus |
131
|
| structure length |
357
|
| sequence length |
363
|
| chains with identical sequence |
B, C, D, E, F, G, H
|
| ec nomenclature |
ec
1.1.1.6: Glycerol dehydrogenase. |
| pdb deposition date | 2011-11-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00465 | Fe-ADH | Iron-containing alcohol dehydrogenase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Dehydroquinate synthase-like, alpha domain | Dehydroquinate synthase-like - alpha domain | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Rossmann fold |
