The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
96
|
sequence length |
356
|
structure length |
356
|
Chain Sequence |
SWYEVTGVATIVSSEETARLHALEDALFKAVNFSGADIGSISNLMPLLEESRNEYQFTNHEVRYILVESERKRRGKVEVKIRVDIYPSATGCHTDQYKKTILVGNIEVASPQQAVMGQIYQVGDDFSRVVNRQLDQTSRSFVSVGTTDYSISSNYPARTQMIAQDNGAQYIIGGVITDLTATVESQLLQDDIINRQFALEMKVFDGKTGHEVFNKAYREVARWPFAKTSQVDTRSARFWASTYGEMMLRVSRNIMLDLESELSCKITLPEVVAVFGNTVTMDLGRMHGVKEGDKLQLWHTASFIDQNGLPRNKVSQSEITLTVSRIYEHEAELTIDQPNLASSVQIGDVMNKILHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
molecule keywords |
Flagella basal-body protein
|
publication title |
Insight into the assembly mechanism in the supramolecular rings of the sodium-driven Vibrio flagellar motor from the structure of FlgT
pubmed doi rcsb |
source organism |
Vibrio alginolyticus
|
molecule tags |
Motor protein
|
total genus |
96
|
structure length |
356
|
sequence length |
356
|
ec nomenclature | |
pdb deposition date | 2012-11-14 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF16538 | FlgT_C | Flagellar assembly protein T, C-terminal domain |
A | PF16539 | FlgT_M | Flagellar assembly protein T, middle domain |
A | PF16548 | FlgT_N | Flagellar assembly protein T, N-terminal domain |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Beta | Beta Barrel | Thrombin, subunit H | Thrombin, subunit H | ||
Alpha Beta | 2-Layer Sandwich | Dodecin subunit-like | Dodecin subunit-like | ||
Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | ABC-type transport auxiliary lipoprotein component |